Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151515g00001 ATGCAAACCTTGTTAGCATCATCACCTCCTAATAATAAATTTCAAGGACCAGATTTGTCCTTAAACATAAGCCCTCCATGTGTTTCAGATTCCGAAAACATGAACATGAACATGAACATGTTCCTAAGTAGTAGTAGTAGTAAGAAAATTCTTTACAACGATATAAGCTCTTCAACTTCAGATTCAGGTAGTAGTTGTGGGAGTGCAAGTGATTTAAGCCATGAAAACAACCTTCTTCATCATGAACCTACATTGAGCTTAGGATTTGAAGGTACAACAACATTAGATTTGAATAATAATAATCATAATAATAATAATTACCATCAAGGACTTTCTAGAAGCTTCAACAATAATAATCACCACCATTTCCAACCTCAAATCTATGGTCGTGGCGAGTTCAAGAGAAGCTCGAGGGTCACTAATGGAGTCAAGAGGAGTGTAAGAGCACCTAGGATGAGATGGACAACAACCCTCCATGCCCATTTTGTTCATGCTGTTCAACTCCTTGGTGGCCATGAAAGGGCAACTCCAAAGTCAGTTTTAGAGCTAATGAATGTTAAGGATCTAACCCTAGCACACGTCAAAAGTCACTTACAGATGTATAGAACAGTGAAGAGCACTGACAAAAGCACAGGTCATGGGCAGACAGATATGGGTTTAAGCCCAATAATGCCAAGGATTAATAATAATGTTTCTCATTTGCATGCCAATAATGGAGTTTCAACTTGTGATGATGATGACGAGAGATCAAATACTTTACCACATCCACCACAAAATTATTCCCAAAGGGCATCATGGCAATCATCAATGGAGGCAAATACAAACAATAGTAGACAAAAACCCCAAATTGGTTTGACGTATTCTCATATAAAGGGAAATGAAACCATGGTGGAAGAGCACAATTGTGGGAGCATGTCTAATTGCATGAAGGAGAAGTTGTTGGATTCTACTCCATTGTCAAGTTCTCAAGAGGTGATGCTTGATCTTGAATTCAGCCTTGGAAGGCCAAATTGGGAAAAAGAACAACATCATCAAAAGGAATCATCATCAAGAGTAGAGTTAACCCTTCTCAAATGTTAA 1080 0.3824 MQTLLASSPPNNKFQGPDLSLNISPPCVSDSENMNMNMNMFLSSSSSKKILYNDISSSTSDSGSSCGSASDLSHENNLLHHEPTLSLGFEGTTTLDLNNNNHNNNNYHQGLSRSFNNNNHHHFQPQIYGRGEFKRSSRVTNGVKRSVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKSTGHGQTDMGLSPIMPRINNNVSHLHANNGVSTCDDDDERSNTLPHPPQNYSQRASWQSSMEANTNNSRQKPQIGLTYSHIKGNETMVEEHNCGSMSNCMKEKLLDSTPLSSSQEVMLDLEFSLGRPNWEKEQHHQKESSSRVELTLLKC 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151515g00001 359 Pfam Myb-like DNA-binding domain 151 202 IPR001005 -
Stsc151515g00001 359 SUPERFAMILY Homeodomain-like 147 204 IPR009057 -
Stsc151515g00001 359 MobiDBLite consensus disorder prediction 253 279 - -
Stsc151515g00001 359 MobiDBLite consensus disorder prediction 233 279 - -
Stsc151515g00001 359 FunFam Myb family transcription factor 148 206 - -
Stsc151515g00001 359 Gene3D - 149 206 - -
Stsc151515g00001 359 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 17 343 IPR044847 GO:0000976|GO:0006355|GO:0010158
Stsc151515g00001 359 NCBIfam myb-like DNA-binding domain, SHAQKYF class 150 203 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151515g00001 Stsc-Chr151515 13097 18712 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151515g00001 73 242 G2-like Transcription Factor Family AT5G42630 58.480 2.99e-51 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc151515g00001 Myb_DNA-binding 1.6e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151515g00001 - - adu:107495895 495.352