Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151511g00006 ATGGGAAGAGTACCTTGTTGTGACAAGAATAATGAACTCAAGAAAGGTCCATGGACACCAGAGGAAGATCTCAAGCTTGTCCACTACATCCAGAAACATGGACCTGGAAACTGGAGATCCCTCCCAAAGAATGCTGGTCTGCAAAGATGTGGCAAGAGTTGCCGCCTTAGATGGACAAATTACCTGAGACCTGACATTAAGAGAGGAAGATTCTCCTTTGAAGAAGAAGAAACCATCATCCAGCTTCACAGCGTCATGGGAAACAAGTGGTCGGCTATAGCGGCGCGATTGCCAGGAAGAACAGACAATGAGATAAAGAACTACTGGAACACACACATAAGGAAAAGGCTGCTAAGAATGGGGATTGATCCGGTTACTCACGCACCGCGCCTCGATCTACTGGACATGTCATCTGTGCTTAGATCAGCGTTAGGGAGCCCTTCATCAATTCTGAATCTGCAAGGCTTGTTGGTAAACCCTGAATTGCTAAAGCTTGTAGCCACTGCATCTCTATTATCTCAGACTCAGAATAATCTACCACAATTGATCAATGCTGCCGGGGATTTGAATTCGAATTCTCAACAACTACAAAACCATTTCCAACAAGAGTCAAGGAATCATGATCAGTTTCGGATGCCAAATCAGAGCATGAATAATTGTAACGCCATGAATAATTCATTTACTACGACTACTCCTTCTTCATATGTTGGAGAGAATTTGAATGTGTGTCAGCAAAGGCAAGTTGATTTGCTAGAGAATGAATTGTTACAGTACATAAACAATGGTAATGACCAAAACATTATGGGGTATGAATCGGTTATGTCAACGCCTCTGTCGACCCCAACAACAACGCCTTTGACTTCATCATCAACTTATGTGAATAGCAGCAACGCAGAACAGGAAGAGAGGGACACCTATTGCAGTGAAGTTTTCAAATTAGAGATTCCAGAGAGTCTTGATATTAATGACTTCTTGTAA 978 0.4254 MGRVPCCDKNNELKKGPWTPEEDLKLVHYIQKHGPGNWRSLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSVMGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHAPRLDLLDMSSVLRSALGSPSSILNLQGLLVNPELLKLVATASLLSQTQNNLPQLINAAGDLNSNSQQLQNHFQQESRNHDQFRMPNQSMNNCNAMNNSFTTTTPSSYVGENLNVCQQRQVDLLENELLQYINNGNDQNIMGYESVMSTPLSTPTTTPLTSSSTYVNSSNAEQEERDTYCSEVFKLEIPESLDINDFL 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151511g00006 325 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Stsc151511g00006 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Stsc151511g00006 325 MobiDBLite consensus disorder prediction 277 300 - -
Stsc151511g00006 325 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 271 - -
Stsc151511g00006 325 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Stsc151511g00006 325 Gene3D - 70 117 - -
Stsc151511g00006 325 FunFam MYB-related transcription factor 14 67 - -
Stsc151511g00006 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Stsc151511g00006 325 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Stsc151511g00006 325 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Stsc151511g00006 325 Gene3D - 14 67 - -
Stsc151511g00006 325 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Stsc151511g00006 325 SMART sant 67 115 IPR001005 -
Stsc151511g00006 325 SMART sant 14 64 IPR001005 -
Stsc151511g00006 325 CDD SANT 70 113 IPR001005 -
Stsc151511g00006 325 FunFam Transcription factor MYB39 70 131 - -
Stsc151511g00006 325 CDD SANT 17 62 IPR001005 -
Stsc151511g00006 325 Coils Coil 241 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151511g00006 Stsc-Chr151511 26929 28186 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151511g00006 1 325 MYB Transcription Factor Family AT4G21440 51.397 1.48e-102 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc151511g00006 Myb_DNA-binding 7.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151511g00006 K09422 - gmx:102668351 389.423