Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151511g00001 ATGGACTTTGAGCTTGAGAACCCCTTCCATGAGAACTACCATGACCTTCCCTTTGAAGCTGTCACCTCTCTCTTCCACATTGAATCCGACCACATCCCTCCCTCAACTTACTTCCACACTCTCAAGGCTACCAATTCCGATATCTCTCTTAGAAGACATCTCATTTCCTTCATATCACAGTTGTCCTGCACCTTTGATCCGCAACAAAAGCCATGGAGCAACAAGCTTCTTGCAATCTCTTGCTTCTCTCTAGCTGCCAAGATGCTAAAGATAGAGTATTCTCTCACTGATGTTCAGGCTCTTGTGAATAATCATGGTGATGGTGGTGTCATATTTGAGGCACAAACAATACAAAGAATGGAGGCCATTGTGTTGGGGACACTGCAATGGCGCATGCGTTCCATTACACCATTCTCATTCATCCCTTTCTTCATCAACATGTTTGGCATCAATGACCCTGCATTCAACCAGGTACTCAAAGATAGGGCCTCCCAGATCATATTGAAGTCTCAAACAGAGATAAAGGTTTTGGAATTCAAGCCATCTGTAATTGCAGCATCAGCTCTACTGTCTGCTTCACATGAGCTGTATCCCTTTCAGTATCCGTGCTTCTTCAGAGCAATATCTGATTCTTCATATGTAAATAAAGAAAGCATGATGCAGTGCTGTAATGTGATACAGGAGATAGGAAGAGAGGAGTACGAATCATCTGTGTTGAATAATGTGAATTCAAGTTCAGACACACCGGTTAATGTATTGGATGGACATTTTCTGAGCTTGGAAGAAAGTGAAAAAACCAACATTGCTGCTCCTAAGGACCTCATCAAAAGAAGATCATCAAAATTCACTGCCTATGCTAACAACAACAACCATTCTCACCATCAATGCTGA 891 0.4231 MDFELENPFHENYHDLPFEAVTSLFHIESDHIPPSTYFHTLKATNSDISLRRHLISFISQLSCTFDPQQKPWSNKLLAISCFSLAAKMLKIEYSLTDVQALVNNHGDGGVIFEAQTIQRMEAIVLGTLQWRMRSITPFSFIPFFINMFGINDPAFNQVLKDRASQIILKSQTEIKVLEFKPSVIAASALLSASHELYPFQYPCFFRAISDSSYVNKESMMQCCNVIQEIGREEYESSVLNNVNSSSDTPVNVLDGHFLSLEESEKTNIAAPKDLIKRRSSKFTAYANNNNHSHHQC 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151511g00001 296 SMART Cyclin_C_2 135 250 IPR004367 -
Stsc151511g00001 296 CDD CYCLIN_AtCycD-like_rpt2 135 226 - -
Stsc151511g00001 296 SUPERFAMILY Cyclin-like 18 132 IPR036915 -
Stsc151511g00001 296 Pfam Cyclin, N-terminal domain 74 132 IPR006671 -
Stsc151511g00001 296 Pfam Cyclin, C-terminal domain 135 237 IPR004367 -
Stsc151511g00001 296 Gene3D - 112 245 - -
Stsc151511g00001 296 SUPERFAMILY Cyclin-like 117 251 IPR036915 -
Stsc151511g00001 296 PANTHER CYCLINS 74 236 IPR039361 -
Stsc151511g00001 296 FunFam D6-type cyclin 127 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151511g00001 Stsc-Chr151511 6692 8999 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151511g00001 1 280 Core Cell Cycle Gene Families AT4G03270 39.355 5.67e-61 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151511g00001 K18812 - gmx:100799951 375.17