Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151510g00004 ATGGTGAGAGCTCCTTGCTGTGAGAAGATGGGATTGAAGAAGGGTCCATGGACGCAAGAAGAAGATCAAATCCTCATCTCTTACATCCAAAAACATGGCCATGGCAATTGGCGTGCCCTCCCAAAGCAAGCAGGGCTGTTAAGGTGTGGAAAGAGCTGCAGATTAAGGTGGATAAACTATCTGAGGCCTGATATCAAGAGAGGCAATTTCACCATTGAAGAAGAAGAAACCATCATCAAGCTCCATGAAATGCTTGGAAACAGGTGGTCAGCGATCGCGGCGAAATTATCCGGGAGAACAGACAATGAGATTAAGAATGTGTGGCACACTCATTTGAAGAAGAGGCTCAACAAACCAAACCAAATGAATTCATCATCATCAGATACCAAAAGGGTATCTAATAAGGCAAAGATCAAACGTTCTGATTCAAATTCAAGCACCATAACAACTTTTCAATCATCAGAACCAACAAGTCTTAATAATCTCCCTGAAATGGACACAACTTCAACCTCTAGTGAGTTCTCATCAGCCACCACAACAAATAATGGTGAAAGCAATAAGAACATGAACATGAACATCAAGAGTGAGGAATTAGAAGATTCTTCATTGGAGACAATAATTGATGAAAGCTTTTGGTTAGAGGCAGCAATGGATGATGAAACCACCACCAACATGACAATCTCAAATAATAGTAACGAGTTGTTACCATCACTTCAATATTATGATGACCCATTGTTATTTAATTCTGAGGAGAATTTAAGCTTCCAAGAACCAAGTACAAACTTCGATGATGGCATGGATTTTTGGTATGATATATTCATTAGAACTGGCGAATCAATAGAATTGCCAGATTTCTGA 858 0.3963 MVRAPCCEKMGLKKGPWTQEEDQILISYIQKHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTIEEEETIIKLHEMLGNRWSAIAAKLSGRTDNEIKNVWHTHLKKRLNKPNQMNSSSSDTKRVSNKAKIKRSDSNSSTITTFQSSEPTSLNNLPEMDTTSTSSEFSSATTTNNGESNKNMNMNIKSEELEDSSLETIIDESFWLEAAMDDETTTNMTISNNSNELLPSLQYYDDPLLFNSEENLSFQEPSTNFDDGMDFWYDIFIRTGESIELPDF 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151510g00004 285 Gene3D - 13 66 - -
Stsc151510g00004 285 CDD SANT 69 112 IPR001005 -
Stsc151510g00004 285 FunFam MYB-related transcription factor 13 66 - -
Stsc151510g00004 285 CDD SANT 16 61 IPR001005 -
Stsc151510g00004 285 MobiDBLite consensus disorder prediction 117 131 - -
Stsc151510g00004 285 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc151510g00004 285 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 223 - -
Stsc151510g00004 285 MobiDBLite consensus disorder prediction 113 189 - -
Stsc151510g00004 285 MobiDBLite consensus disorder prediction 139 189 - -
Stsc151510g00004 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Stsc151510g00004 285 SMART sant 66 114 IPR001005 -
Stsc151510g00004 285 SMART sant 13 63 IPR001005 -
Stsc151510g00004 285 Gene3D - 68 144 - -
Stsc151510g00004 285 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc151510g00004 285 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Stsc151510g00004 285 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc151510g00004 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Stsc151510g00004 285 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151510g00004 Stsc-Chr151510 27677 30324 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151510g00004 1 285 MYB Transcription Factor Family AT2G31180 48.958 3.86e-80 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc151510g00004 Myb_DNA-binding 1.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151510g00004 K09422 - gmx:100806975 337.035