Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151509g00003 ATGGCAGCAAGCACAGATAGCATCCCATCTCACATAAAAGCTTGGGAGTACAATGAATATGGGAACATTGAAGAGACTCTCAAGCTTGACTCAAACATAGCTATACCAGAACTCAAGGATGACGAGGTTCTCATCAAGGTTGTGGCTGCAGCCCTTAACCCTGTAGATTACAAGAGGGCCCTTGGAATTTTCAAGGACACTGACTCTCCATTCCCAACGGCTCCAGGGTATGACGTTGCTGGTGTGGTGGTGAAAGTAGGAAACAACGTGAAGAAATTTAAGGTTGGAGATGAAGTTTATGGTGATATCAATGAGAATGCTGGGAAGCCAAAGGCTATTGGGAGCTTAGCAGAGTATACAAGTGCTGAAGAGAAGGTGTTGGCTCACAAACCCTCTAATTTAAGCTTTGTTGAAGCTGCTAGCCTCCCTTTAGCACTCATCACTGCCTATCAAGGTATTGAGAGAGCTCAATTTTCTGCTGGAAAATCTATTCTTGTTCTTGGAGGTGCTGGCGGGGTTGGAAGCCTTGTTATTCAGCTAGCAAAGCAAGTTTTTGGTGCATCAAAGGTAGCAGCTACTGCTAGTACTGGAAAATTGGAGCTGTTAAGACAGTTAGGAGCAGACTTGCCTATTGATTATACAAAGGACAATTTTGAAGAGCTGCCAGAAAAGTTTGATTTTGTGTATGACACAGTAGGACAAAGTGAGAGGGCATTGAAGGCTGTTAAAGAAGGAGGAGAAGTAATAACAATAGCAGGACCTGCAACTCCACCTGCAATATGGTTCTTTCTCACTTCAGATGGTGGTGTGTTAGAGAAACTGAGACCTTATTTAGAGAGTGGAAAGGTGAAGGCAGTGTTGGACCCAAAGAGCCCTTTTCCATTTTCTAAGGTGATTGAAGCATTTGCCTACCTCAAGACCAACAGAGCCACCGGAAAAGTTGTTATATATCCAATCCCATAA 963 0.4361 MAASTDSIPSHIKAWEYNEYGNIEETLKLDSNIAIPELKDDEVLIKVVAAALNPVDYKRALGIFKDTDSPFPTAPGYDVAGVVVKVGNNVKKFKVGDEVYGDINENAGKPKAIGSLAEYTSAEEKVLAHKPSNLSFVEAASLPLALITAYQGIERAQFSAGKSILVLGGAGGVGSLVIQLAKQVFGASKVAATASTGKLELLRQLGADLPIDYTKDNFEELPEKFDFVYDTVGQSERALKAVKEGGEVITIAGPATPPAIWFFLTSDGGVLEKLRPYLESGKVKAVLDPKSPFPFSKVIEAFAYLKTNRATGKVVIYPIP 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151509g00003 320 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 161 182 IPR002364 GO:0008270|GO:0016491
Stsc151509g00003 320 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 134 260 IPR036291 -
Stsc151509g00003 320 SUPERFAMILY GroES-like 10 166 IPR011032 -
Stsc151509g00003 320 Pfam Zinc-binding dehydrogenase 205 316 - -
Stsc151509g00003 320 Gene3D - 153 267 - -
Stsc151509g00003 320 Pfam Alcohol dehydrogenase GroES-like domain 41 111 IPR013154 -
Stsc151509g00003 320 Gene3D - 19 316 - -
Stsc151509g00003 320 SMART PKS_ER_names_mod 21 316 IPR020843 GO:0016491
Stsc151509g00003 320 CDD MDR_like_2 13 316 - -
Stsc151509g00003 320 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 2 320 IPR044626 GO:0016628
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151509g00003 Stsc-Chr151509 18177 20124 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151509g00003 68 231 Monolignol Biosynthesis Gene Families AT1G72680 29.016 1.91e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151509g00003 K18980 - gmx:100791274 488.034