Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151507g00005 ATGATGAAAGGTAGCTGGGAAGAGCATTTTTACTTTCACTGTGCTCACATAGCTTCAGAAATCAGATTCATCATCCACGATGGATATCATAAAATTGAAAGAGAGGCTCCTGCTGAATATATCTTGAATAATTCAGGTCAACTAATCAAATGGGTCCAAGCAGAACAGTATTGGTCAAATCAAACGATCAAAATGGACCTGAAATTTGTTGATGCTAGACAACACAGGCAAGGAATCAGTCCAGAATTTCTTGGGGTTCCACGCACTCCATTCCCACAGAGAAATGGATGCAGGGTTACTCTTTACCAAGATGCTCATATCCCTGATGATTATGTCCAGAAAATAAGGAGTGCTGGAATGGAGAGTTACCAACCACAAAGTTGCTGGGAGGATATATTTGATGCAATTGATAAGGCACAAAACTTTATATATATTGCTGGATGGTCTCTTTACACTGAAATAGCCCTGTTAAGGGATCCAGCAAGGAGGCCATCAGAGGAAGAAAGAGGCACAACACTTGGTGAGCTGCTCAAGAGAAAGGCGGAGAAAGACAATGTCAAGGTTGTATTGCTCCTTTGGAATGATCCAACCGAGATTCCAGGCTGGTATGGAGGAAAAATGGAAGTTCATAATAAAGAAACCCGTGAGTATTTTAAGAACACTCCTAATGTGGAGTGTGTTGTGTGTAGTCGTGATGGTTTATTGAAAGGTCCTGATGGTTGGATTTATAGTCATCATCAGAAGATTGTGTTGGTGGACAGTGACGACGACGATGATGGAATAATAAAAAGAAGAGTAGTTAGTTTTATTGGTGGTTTTGATCTTTCTCATGGAAGATATGATACTCCAACTCATCCACTCTTTAGAACCCAAACCAAAGATTTCGTTCAACCTAGCATTCACGGCTTTAGAATCGAAGAAGGCGGTCCTAGGGAGCCATGGCATGATGTGCATGCTAAGCTTGAAGGGCCAATTGCATGGGATGTTTATTCCGCCTTTTTCCAGAGATGTGAGAAGGAAGGCATAAAAAATGTTTCCGAGCATATTCTTCAAGATGTCATCTTTGGACCGCCATCCCAACAAGAAGTAATAACAAATCGCTCTCGTAACGACACGTGGAATGCTCAGTTATTCAGATCTATTGATGATAGAGCTACCTCTGGGCTTGAGCATGGGTCTGGGCTTGTTGGAGAGAAAAACAAAATAATAGATCGTAGCATCCAACACGCCTATATCGATGCTATTAGGCGCGCAAAGAACTTCATTTACATTGAGAATCAATATTTCATAGGAAGCAGTTTTGGATGGAGTGCTAAAGATGGCAGCATCAAAGGAGAGGACAATGATGATGCATGGCATCTTGTCCCAAAGGAGCTTTCACTTAAAATCGTTAGCAAGATTAAATCTGGGGAAAGATTCTCTGTTTATGTTGTGATTCCAATGTGGCCAGAGGGTGACCCGCATGATGGTGTGATGGGAATTGTTCAAAAAATGTTGGATCTCCAAAGGAAGACCATAGAGATGATGTACAAGGACATTGTTAAAGCACTCAAGGAAGAGAAAATTGAACAAGATCCTCGAATGTATCTGTCATTCTTTTGCCTTGGCAATCGAGAGGCCGGGAGTGATGATGAACATCAACCTCTGAAAATTCCAAAGCAAAATTCTCATCATTACAAAGCCCAGACCAATAGACGCTTCATGATTTATGTACATTCCAAGATGATGATAGTTGATGATGAATACATAATTATTGGATCTGCTAACATCAACCAAAGATCAATGGATGGTGGAAGAGACACCGAGATTGTCATGGGAGCTTATCAGCCAAACCATTTGGTTGCTGGGCCAGGTGGTGCGAGAGGCGATATCCATAGTTTCCGAATGTCCCTATGGTACGAGCACCTTGGCATGTTTGAACACACCTTTCTAAACCCTGAAACTGAAGAATGCATTAACAAGGTGAATGAACTTGCTCAACAGAATTGGGACTTGTATTCTGCAGAATCATTTGACCGTGACCTTCCTGGCCATTTACTCCGTTATCCTTTTCAAATTTCTAAGGATGGAGTTGTCCAAGAACTTCCAGAATTTGAGTTCTTCCCAGACACCAATGCTAGTGTTCTAGGGAAGCCAAAGCCTTACATTCCAAAAAGGCTTGCCTCCCGTTAG 2172 0.4167 MMKGSWEEHFYFHCAHIASEIRFIIHDGYHKIEREAPAEYILNNSGQLIKWVQAEQYWSNQTIKMDLKFVDARQHRQGISPEFLGVPRTPFPQRNGCRVTLYQDAHIPDDYVQKIRSAGMESYQPQSCWEDIFDAIDKAQNFIYIAGWSLYTEIALLRDPARRPSEEERGTTLGELLKRKAEKDNVKVVLLLWNDPTEIPGWYGGKMEVHNKETREYFKNTPNVECVVCSRDGLLKGPDGWIYSHHQKIVLVDSDDDDDGIIKRRVVSFIGGFDLSHGRYDTPTHPLFRTQTKDFVQPSIHGFRIEEGGPREPWHDVHAKLEGPIAWDVYSAFFQRCEKEGIKNVSEHILQDVIFGPPSQQEVITNRSRNDTWNAQLFRSIDDRATSGLEHGSGLVGEKNKIIDRSIQHAYIDAIRRAKNFIYIENQYFIGSSFGWSAKDGSIKGEDNDDAWHLVPKELSLKIVSKIKSGERFSVYVVIPMWPEGDPHDGVMGIVQKMLDLQRKTIEMMYKDIVKALKEEKIEQDPRMYLSFFCLGNREAGSDDEHQPLKIPKQNSHHYKAQTNRRFMIYVHSKMMIVDDEYIIIGSANINQRSMDGGRDTEIVMGAYQPNHLVAGPGGARGDIHSFRMSLWYEHLGMFEHTFLNPETEECINKVNELAQQNWDLYSAESFDRDLPGHLLRYPFQISKDGVVQELPEFEFFPDTNASVLGKPKPYIPKRLASR 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151507g00005 723 Pfam Phospholipase D Active site motif 243 279 IPR001736 GO:0003824
Stsc151507g00005 723 Pfam Phospholipase D Active site motif 568 594 IPR001736 GO:0003824
Stsc151507g00005 723 Gene3D Endonuclease Chain A 112 351 - -
Stsc151507g00005 723 SMART pld_4 567 594 IPR001736 GO:0003824
Stsc151507g00005 723 SMART pld_4 243 279 IPR001736 GO:0003824
Stsc151507g00005 723 SUPERFAMILY Phospholipase D/nuclease 405 652 - -
Stsc151507g00005 723 Pfam Phospholipase D C terminal 641 711 IPR024632 -
Stsc151507g00005 723 Gene3D Endonuclease Chain A 361 611 - -
Stsc151507g00005 723 SUPERFAMILY Phospholipase D/nuclease 85 339 - -
Stsc151507g00005 723 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 241 279 IPR001736 GO:0003824
Stsc151507g00005 723 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 567 594 IPR001736 GO:0003824
Stsc151507g00005 723 PANTHER PHOSPHOLIPASE D 4 710 IPR015679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151507g00005 Stsc-Chr151507 31009 33465 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151507g00005 6 722 Phospholipase D Gene Family (Wang group) AT3G15730 51.455 0.0 712
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151507g00005 K01115 - sspl:121795050 728.398