Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151495g00001 ATGTTTTCCCCACCACTCTCAACAACTTCCCTCCCTCCAAAACCTCACCTCTCTCACCCACTCTTCTCCACACTTCACCAAACTCCCTTCCCTCGCTCTCGCCATTCTTTTGCTCCTTCCATCTCCTGCGGCATTAGAGAACTTCGACAAAGAATCGACTCCGTTAAGAACACTCACAAAATCACCGAAGCCATGAAACTCGTAGCCGCCGCAAGGGTCCGACGGGCCCAAGAAGCCGTCCTTAATGGCCGTCCATTTTCCGAGACGCTTGTCGAAGTCTTGCACGACATCAACTGCCGTCTCCGTGACGATGACGTCATCATCCCGCTAACTGACGTCAGGCCCGTCAAAACCGTCGCGCTCGTTGTCGTCACCGGAGACCGCGGTCTCTGCGGCGGTTTCAATAACGCCGTCGTGAAGAAAGCCGAAACAAGGATCCAAGAGCTAAACAAGCTTGGCTTGGATTGCGTTGTGATCAGCGTTGGGAAGAAGGGGAACGCGTTTTTCAGCCGCAGGGGAAGTGTTAGGGTTGATAGGTTCGTTGAATGTGGGAGCTTCCCCACTGTGAAAGAAGCTCAAACCATTGCTGATGACGTGTACTCATTGTTTGTTACAGAGGAGGTTGATAAGGTTGAGATTGTTTACACCAAGTTTGTGTCACTGGTGAAGTTTGATCCTGTGATTCAAACTCTGTTGCCATTAACGGCCAAAGGCGAGGTTCGCGACTCGAATGGGAACTGCATTGATGCAGTTGATGATGAGTACTTTAGGTTGACGACGAAGGAAGGGAAGTTGGCAGTGGAGAGGGATGTTGCTGTGAGGAAGAAGAAGGAGAAAGGAGGGGAATTCGAGCCGATTATGGAGTTCGAGCAGGATCCGGTTCAGATTCTTGATGCTATGTTGCCTCTGTATTTGAACAGCCAGATCTTGAGGGGCTTGCAGGAATCACTGGCGAGTGAGCTCGCTGCTAGGATGGCTGCAATGTCTAGTGCAACCGATAATGCAATAGAATTGAAGAAGAGTCTTTCGGTTGCTTATAATCGCGAACGGCAGGCAAAGATCACAGGGGAGATATTGGAGATTGTGGCTGGAGCTGAGGCACTAACACCAGTTGATTGA 1119 0.5049 MFSPPLSTTSLPPKPHLSHPLFSTLHQTPFPRSRHSFAPSISCGIRELRQRIDSVKNTHKITEAMKLVAAARVRRAQEAVLNGRPFSETLVEVLHDINCRLRDDDVIIPLTDVRPVKTVALVVVTGDRGLCGGFNNAVVKKAETRIQELNKLGLDCVVISVGKKGNAFFSRRGSVRVDRFVECGSFPTVKEAQTIADDVYSLFVTEEVDKVEIVYTKFVSLVKFDPVIQTLLPLTAKGEVRDSNGNCIDAVDDEYFRLTTKEGKLAVERDVAVRKKKEKGGEFEPIMEFEQDPVQILDAMLPLYLNSQILRGLQESLASELAARMAAMSSATDNAIELKKSLSVAYNRERQAKITGEILEIVAGAEALTPVD 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151495g00001 372 ProSitePatterns ATP synthase gamma subunit signature. 354 367 IPR023632 -
Stsc151495g00001 372 Pfam ATP synthase 45 368 IPR000131 GO:0015986|GO:0045261|GO:0046933
Stsc151495g00001 372 NCBIfam ATP synthase F1 subunit gamma 44 368 IPR000131 GO:0015986|GO:0045261|GO:0046933
Stsc151495g00001 372 Hamap ATP synthase gamma chain [atpG]. 42 368 IPR000131 GO:0015986|GO:0045261|GO:0046933
Stsc151495g00001 372 CDD F1-ATPase_gamma 45 365 IPR000131 GO:0015986|GO:0045261|GO:0046933
Stsc151495g00001 372 Coils Coil 45 65 - -
Stsc151495g00001 372 FunFam ATP synthase gamma chain, chloroplastic 261 368 - -
Stsc151495g00001 372 Gene3D - 108 236 - -
Stsc151495g00001 372 PANTHER ATP SYNTHASE GAMMA CHAIN 39 368 IPR000131 GO:0015986|GO:0045261|GO:0046933
Stsc151495g00001 372 FunFam ATP synthase gamma chain, chloroplastic 43 110 - -
Stsc151495g00001 372 PRINTS ATP synthase gamma subunit signature 209 226 IPR000131 GO:0015986|GO:0045261|GO:0046933
Stsc151495g00001 372 PRINTS ATP synthase gamma subunit signature 315 334 IPR000131 GO:0015986|GO:0045261|GO:0046933
Stsc151495g00001 372 PRINTS ATP synthase gamma subunit signature 116 135 IPR000131 GO:0015986|GO:0045261|GO:0046933
Stsc151495g00001 372 PRINTS ATP synthase gamma subunit signature 346 367 IPR000131 GO:0015986|GO:0045261|GO:0046933
Stsc151495g00001 372 FunFam ATP synthase gamma chain 109 235 - -
Stsc151495g00001 372 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 44 368 IPR035968 GO:0015986|GO:0045261|GO:0046933
Stsc151495g00001 372 Gene3D ATP synthase, gamma subunit, helix hairpin domain 259 368 - -
Stsc151495g00001 372 Gene3D ATP synthase, gamma subunit, helix hairpin domain 43 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151495g00001 Stsc-Chr151495 4673 5934 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151495g00001 14 368 Primary Pumps ATPases AT1G15700 69.832 1.24e-170 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151495g00001 K02115 - qsa:O6P43_013711 509.99