Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151488g00005 ATGCCAATAACAAAAATAATAATTAGAAAAACCACTAGCTTAACTCTTGCACATGACATGGGTGGTACCCTTTCATTCAAGCCAATATTCAACATCACATTTCCTTTGTTCCTCATCACCGTCATTGACCCCTTCATCGTTGCCAACGCCGACGACATCTACGATTCTAGAGAAACCCCTCCAACTTTTCCAACTGGCAATATATCAGCAAGAGACTCCAACCACTTAAATAGAAAATCAGAGCCATTTAAGCCAACCACGATCATCGTGGTTAGTATATTTGCCGCCTTGTTCTTCCTCACGTTTATTCTCCTTCTTTACATCAAACATTGTATTCGTGGTAATCATGAAAACCAATCTCATCAAGAGGGTGAGCCGCTGCAGAGGAATAACTCTGGCATTGATCCTGTTGTTGTGGAGAAGCTCCCGATTTTTCGATTTGGATCACTAAGAGGACAAAAGGAAGGGTTGGATTGTGCAGTTTGCTTAAACAGGTTCGAGATTACAGATGTTCTTCGTTTGCTTCCAAAGTGCAACCATGCTTTTCATATGGATTGTGTAGACAAGTGGCTCGACGAGCATTCAACTTGCCCTCTCTGTCGCAACAGGGTGGACCCCAAAGACATCCTTACAAGGGAACAATTACTAGAACAAGAAGTAAAAGAAGGAGAAAGAGGTAATGAAGCAAATCCAATAGGGGATATTGAGAAAGGAACCTTTCGCAGAGTCTCTGGGAGGCACTCATCAGTGCTAGGAGAAAGAGAAGGTGGGCTCTTGGATATTATTACGCAAAATAATTCCAATGAGAGAAAGAATAAGAAAAGGAGGTCATCTAGTAGCAGGAGAAGCTTTGGTGGCTTTGTTCGCTCAAGAAAAGACAAAACATTAATGGGAAGGCAAGAAGAACACCATAGATTGGAGCACCGGATTATTATTGATTCACCGATGGCCTTTTCCGTTATGTCTAACGGCGAAGGAGAGTCATCATCACAACAACATCATAGCTGGAATGAAGTTTCACCATCAAATCTTTTGTACTTAACGTCTGAAATGATAATCAGTGATGGTGCTTCTTCTACCCGCGGGGAAAGAAGACCAACTCATAACCGCATTGTTAGCAATGGGAATGAGAATAACAGGAATGAGCACATTCTTGGGAGGGAGCAAAGAAAGAGAACGTAG 1182 0.4213 MPITKIIIRKTTSLTLAHDMGGTLSFKPIFNITFPLFLITVIDPFIVANADDIYDSRETPPTFPTGNISARDSNHLNRKSEPFKPTTIIVVSIFAALFFLTFILLLYIKHCIRGNHENQSHQEGEPLQRNNSGIDPVVVEKLPIFRFGSLRGQKEGLDCAVCLNRFEITDVLRLLPKCNHAFHMDCVDKWLDEHSTCPLCRNRVDPKDILTREQLLEQEVKEGERGNEANPIGDIEKGTFRRVSGRHSSVLGEREGGLLDIITQNNSNERKNKKRRSSSSRRSFGGFVRSRKDKTLMGRQEEHHRLEHRIIIDSPMAFSVMSNGEGESSSQQHHSWNEVSPSNLLYLTSEMIISDGASSTRGERRPTHNRIVSNGNENNRNEHILGREQRKRT 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151488g00005 393 ProSiteProfiles Zinc finger RING-type profile. 159 201 IPR001841 -
Stsc151488g00005 393 Pfam Ring finger domain 158 201 IPR001841 -
Stsc151488g00005 393 MobiDBLite consensus disorder prediction 286 305 - -
Stsc151488g00005 393 MobiDBLite consensus disorder prediction 257 305 - -
Stsc151488g00005 393 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 73 382 - -
Stsc151488g00005 393 MobiDBLite consensus disorder prediction 356 393 - -
Stsc151488g00005 393 FunFam RING-H2 finger protein ATL43 134 208 - -
Stsc151488g00005 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 209 IPR013083 -
Stsc151488g00005 393 SUPERFAMILY RING/U-box 139 207 - -
Stsc151488g00005 393 CDD RING-H2_EL5-like 158 201 - -
Stsc151488g00005 393 SMART ring_2 159 200 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151488g00005 Stsc-Chr151488 29214 31494 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151488g00005 85 392 C3H Transcription Factor Family AT5G05810 41.667 1.02e-54 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151488g00005 K19041 - cic:CICLE_v10010271mg 233.032