Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151482g00003 ATGAGAGAAAACACAAGGGAGAGAGAAAACCAGAGAGACGGTGAGCGGGGTAACGAGAGTCAATGGAAGGTAGTTTTCAGGAGAAAACCCAATAGCCATTGGCGGGCAGGCCAACCAACCTATAACCGTGTGTCATGGAATCAGAGTGGAAGGGGTGGAGCAAGTGGAAGAGCAAGAGTGACGGACTGGATAGAAGATGAAACGTTTAGCATATTTGTGGACAACCTTCCTTACGATGTAACAAGAACTTGGTTATGGGAGGCTTTTAGCAGTACTGGGAGGGTGGTTGATGTCTATTTATCCAGAAAAATAAGAAAATCAAACCAGCTGGGATTTGCTTTCATTAGGTACAAATCCAAAGAAGAGGTGCTAAGAACCATCGAGCAATTAGATGGTTGGATCGTCCGGGGGTGCAGTCTAAAGGTGACAGAATCGAGATATAAGAGAAGCGGAAGAGGCAGAAACGGAATAGGAGGAAAAGGGGATGAAAAGGTGAATCCAGAATCTGAACCGGGTCCAGAACGAAGTGAGAATAGCAAGCAGATGACATATAGAGACATACTCATGAAAGGGAAACAAGGAGAGGATCCCAAACCAGATGGGGAATACAGAGCTCTACAAACCCTAGGAGACTCAAAGATTTATCTAGAAGAAGATAAGGAGGCAAAGGAGAATCTGTACCGCTGCCTAGTGGGGGAGATGTTAATGTCGTACGACTTTGAATCATTAAGGGATTCCCTCATGATGGAATGA 753 0.4502 MRENTRERENQRDGERGNESQWKVVFRRKPNSHWRAGQPTYNRVSWNQSGRGGASGRARVTDWIEDETFSIFVDNLPYDVTRTWLWEAFSSTGRVVDVYLSRKIRKSNQLGFAFIRYKSKEEVLRTIEQLDGWIVRGCSLKVTESRYKRSGRGRNGIGGKGDEKVNPESEPGPERSENSKQMTYRDILMKGKQGEDPKPDGEYRALQTLGDSKIYLEEDKEAKENLYRCLVGEMLMSYDFESLRDSLMME 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151482g00003 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 147 IPR000504 GO:0003723
Stsc151482g00003 250 MobiDBLite consensus disorder prediction 1 21 - -
Stsc151482g00003 250 SUPERFAMILY RNA-binding domain, RBD 63 161 IPR035979 GO:0003676
Stsc151482g00003 250 CDD RRM_SF 71 142 - -
Stsc151482g00003 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 140 IPR000504 GO:0003723
Stsc151482g00003 250 SMART rrm1_1 70 143 IPR000504 GO:0003723
Stsc151482g00003 250 MobiDBLite consensus disorder prediction 149 183 - -
Stsc151482g00003 250 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 65 180 - -
Stsc151482g00003 250 Gene3D - 64 172 IPR012677 -
Stsc151482g00003 250 MobiDBLite consensus disorder prediction 149 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151482g00003 Stsc-Chr151482 19626 20378 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151482g00003 68 158 Eukaryotic Initiation Factors Gene Family AT1G49760 29.670 3.54e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151482g00003 K12891 - aip:107648691 78.9517