Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151477g00002 ATGAGATCATCTAAACCATCATCATCAACAGTTTCATACCCTTCTCCTTATTCAATGGGAGTTCTCTACTCAGACATGGGCTCTCTCTCTCTTACCATGCTTTCTTCATCTCATCAGGAAAGTAGTAATTATTATGCCATGGAAATGCAAAACCATATCCAAGAATGCCCCCATAACAATAAAGATTCTGATTATGAAGAAGAAGAAGCAGGAGCTAATGAGGAGAATTATTGTGTGATGATGAGTAGTGGCAAAGTGGTAAATAATAGTGAAAGGAACAAAGTATGTGCAAGAGGGCATTGGAGGCCTGAAGAAGATTCCAAGCTGAAGGAGCTTGTGGCTCTTCATGGCCCTCACAACTGGAAACTCATTGCTCAGAATCTAGAAGGAAGATCAGGGAAGAGTTGTAGGTTGAGATGGTTGAATCAATTAGATCCAAGAATAAAGAAGAACCCACTGAGTGAAGAGGAGGAAGAGAGGCTAATGGAGGCACATAGAGTGTATGGTAACAAATGGGCCATGATTGCAAGGCTTTTTCCTGGCAGAACAGATAATGCTATCAAGAACCACTGGCATGTTATTATGGCTAGAAACTGCAGGCAACACAAGAAATCCATTGCTTCAAGGACAAACAAAAACCATATTAACACCCTTCTCTTCAGTAGTAGTAGAAATAATAAGTCAAATAACACCAACACTACTACTACTCATCACATGGCTGCTGCTGCTACTTGTTGGAGACAACAACATGATAATAATAATAATGAAGAGGACTCTTATGGCTTCTATAATCAACAACAGTTTCCTTTTGATTATTATTTCTTCTCTGGTGTTAGTAGCAATTATGATAGACGATGTTATCGGGACAGAACTACTGGTAGTGGTGATGAATGTCATGATCTTCATCCCAAAGAATATCTCTATCAAATGCAAATGCAAATGCCAAAAAACCACAACTTGAAGAGTTACTCATCATCTTCCGGTTGCTCTTCAACATCTACCACAAGACCCCATGTTTGTTTGGCCATGGAGCTATCATCTTCGTCAACAACAACATCATCTAGGGACCCCCCAGATGCATCTTCTAATTTTACACCACCATTAATTGACTTCCTCGGAGTAGGATCCACATGA 1134 0.3986 MRSSKPSSSTVSYPSPYSMGVLYSDMGSLSLTMLSSSHQESSNYYAMEMQNHIQECPHNNKDSDYEEEEAGANEENYCVMMSSGKVVNNSERNKVCARGHWRPEEDSKLKELVALHGPHNWKLIAQNLEGRSGKSCRLRWLNQLDPRIKKNPLSEEEEERLMEAHRVYGNKWAMIARLFPGRTDNAIKNHWHVIMARNCRQHKKSIASRTNKNHINTLLFSSSRNNKSNNTNTTTTHHMAAAATCWRQQHDNNNNEEDSYGFYNQQQFPFDYYFFSGVSSNYDRRCYRDRTTGSGDECHDLHPKEYLYQMQMQMPKNHNLKSYSSSSGCSSTSTTRPHVCLAMELSSSSTTTSSRDPPDASSNFTPPLIDFLGVGST 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151477g00002 377 Gene3D - 152 243 - -
Stsc151477g00002 377 ProSiteProfiles Myb-like domain profile. 98 144 IPR001005 -
Stsc151477g00002 377 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 145 199 IPR017930 -
Stsc151477g00002 377 PANTHER MYB PROTEIN-RELATED 98 236 - -
Stsc151477g00002 377 MobiDBLite consensus disorder prediction 346 361 - -
Stsc151477g00002 377 Gene3D - 98 149 - -
Stsc151477g00002 377 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 93 144 IPR017930 -
Stsc151477g00002 377 CDD SANT 101 142 IPR001005 -
Stsc151477g00002 377 SMART sant 149 197 IPR001005 -
Stsc151477g00002 377 SMART sant 97 146 IPR001005 -
Stsc151477g00002 377 CDD SANT 161 192 IPR001005 -
Stsc151477g00002 377 Pfam Myb-like DNA-binding domain 152 193 IPR001005 -
Stsc151477g00002 377 Pfam Myb-like DNA-binding domain 98 144 IPR001005 -
Stsc151477g00002 377 ProSiteProfiles Myb-like domain profile. 145 195 IPR001005 -
Stsc151477g00002 377 FunFam MYB transcription factor 98 149 - -
Stsc151477g00002 377 MobiDBLite consensus disorder prediction 346 377 - -
Stsc151477g00002 377 SUPERFAMILY Homeodomain-like 98 191 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151477g00002 Stsc-Chr151477 14403 17379 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151477g00002 21 204 MYB Transcription Factor Family AT5G17800 51.256 3.12e-60 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc151477g00002 Myb_DNA-binding 3.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151477g00002 K09422 - psom:113275916 212.616