Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151471g00004 ATGGAAGAGTTGATCATTTCACCTTCTTCATCTTCCTCCCTAGTTTCCACAACCACAACCCCATCATCATCAACACAACCAATAATTCCCCTTCAACAAAACCTTCAATTCTTGCTCCAATCCCAACCCAGCTGGTGGGTCTACGCCATCTTCTGGCACGCCTCTAATGACAACAATGGCAACCTCTACCTCTCTTGGGGTGAAGGCCATTTCCAAGGCACCAACACCAACACCAAACACACCACTACCACCAAAACGCACCACCAAAACGACGCCGAATGGTTCTACCTCATGTCGTTGAACAGAACCTTCTCCATCGGCAACTCTTCTTCTTCTTCTCTCCCCGGTAAGGCTTTCGCTTTGGGCTCAGTTCTTTGGCTCAACAGCAAAGAAGAGCTTCAATTCTATAACTGCGAAAGAGCCAAAGAAGCACACGCTCACGGCATCGAAACCTTGATCTGCATCCCCACCAAAAACGGCGTCGTTGAGATGGGCTCTTACAACACCATCCCCCAAAACTGGAACCTCATTCACCACGTCAAGTCCCTCTTGGAAGATTCCATCATCACCCTCAACAACAACAACATGAATAACCAAAACACTAATAATAATAACGGTCACAACGATCTTGACAAAACCGTTCAGCAAATCTTTGAAGTAGATAATGAAGAATTCTCCTTCGCGGAGATTGGTTTCATCACAGGCCTTGTTGAAGAAGGAGATCAAATCAATTTCAATAACAAAGAAAGCAAAGATTCGTCATCAGTTGTGTTCTCGCATCATCAACAGCCACAACAGCAACCGCCACAGTCTTCTTCGTATGCGGACTCGGAGAATTCAGACTCCGACTGTCCAATTCTGAAAACAGATAACACTGAAAAAAAGCAATCTGAGGCTCCGAAGAACAAAAGAGGGAGGAAACCCGTCCTTAACCGCGAAACCCCGGTGAATCATGTGGAGGCGGAGAGACAGCGGAGGGAGAAGCTAAACCACCGATTCTACGCATTGCGAGCGGTGGTCCCGAACGTTTCGAGAATGGACAAGGCTTCGTTGTTGTCCGACGCCGTTGCTTACATCAACGAGTTGAAAACGAAGATCAAAGATCTCGAATCTCAGGTAGATAACAACAATAATCAGCCCAAGAAGAGAGTAAAGCTCGAAACCGGAGACACTACCATAGACAGCACGGTGACTAATTCGTCCACAACTGTAGTGGATCAACAGAAGAAGTGCAGTAAAAGAAATGATATCAACAACAATAATGGTGATTTTGGTGCTGAGGTGGATGTGAAGATAATAGGGGAAGATGCCATGGTTAGGGTTCAAAGTGAGAATGTGAATCACCCAGGTGCGAGACTGATGGGGGCATTGAAGGATATGGAGTTTCAAGTTCACCATGCTAGCATGACTTGTGTTAATGAGTTAATGCTTCAAGATGTTGTTGGAAAAGTCCCCAATGGAATCATCAGAAGTGAAGAGGGGATTCGATCTGCCATTCTCATGAGGTTGGATAATCACTATAATGTCTAA 1530 0.4549 MEELIISPSSSSSLVSTTTTPSSSTQPIIPLQQNLQFLLQSQPSWWVYAIFWHASNDNNGNLYLSWGEGHFQGTNTNTKHTTTTKTHHQNDAEWFYLMSLNRTFSIGNSSSSSLPGKAFALGSVLWLNSKEELQFYNCERAKEAHAHGIETLICIPTKNGVVEMGSYNTIPQNWNLIHHVKSLLEDSIITLNNNNMNNQNTNNNNGHNDLDKTVQQIFEVDNEEFSFAEIGFITGLVEEGDQINFNNKESKDSSSVVFSHHQQPQQQPPQSSSYADSENSDSDCPILKTDNTEKKQSEAPKNKRGRKPVLNRETPVNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVAYINELKTKIKDLESQVDNNNNQPKKRVKLETGDTTIDSTVTNSSTTVVDQQKKCSKRNDINNNNGDFGAEVDVKIIGEDAMVRVQSENVNHPGARLMGALKDMEFQVHHASMTCVNELMLQDVVGKVPNGIIRSEEGIRSAILMRLDNHYNV 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151471g00004 509 PANTHER MYC 29 502 IPR045084 GO:0003700|GO:0006355
Stsc151471g00004 509 SMART finulus 319 368 IPR011598 GO:0046983
Stsc151471g00004 509 MobiDBLite consensus disorder prediction 245 325 - -
Stsc151471g00004 509 MobiDBLite consensus disorder prediction 245 286 - -
Stsc151471g00004 509 Coils Coil 352 379 - -
Stsc151471g00004 509 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 314 376 IPR036638 GO:0046983
Stsc151471g00004 509 MobiDBLite consensus disorder prediction 287 325 - -
Stsc151471g00004 509 Pfam Helix-loop-helix DNA-binding domain 317 362 IPR011598 GO:0046983
Stsc151471g00004 509 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 31 183 IPR025610 -
Stsc151471g00004 509 MobiDBLite consensus disorder prediction 1 25 - -
Stsc151471g00004 509 CDD bHLH_AtAIB_like 312 372 - -
Stsc151471g00004 509 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 313 362 IPR011598 GO:0046983
Stsc151471g00004 509 Gene3D - 309 379 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151471g00004 Stsc-Chr151471 26466 27995 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151471g00004 1 486 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G17880 32.860 7.64e-81 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc151471g00004 bHLH-MYC_N 1.2e-44 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151471g00004 - K13422 gmx:100804965 495.352