Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151469g00001 ATGCAGGGTGTTACTATTATTCCTACTAGTGGTAGTGGTGGTGGTGGTGGATCTACCATGTCTTCTACTTTGTCAAAAGAAGACACAAACTTGGTTCTTTCTTCTGAGGACTCTTCTTGCCCTGAAGATTCTGAGTTGCTTGAACTTGGTCTTGGATTAGGCCTATCTCATAAACCTGCTCCTAAATCACACACTCATCATCATCATCATGCTAGAATTTTGACGGCTAAGGATTTTCCTTCTTCAGCTTCAGCTTCTTCATCATCTTCATCTTCATCTCCTTCTTCTTCTTTGAGCAGGGCCAATAACAATACCACCACCACTTCTGGCACCAAGAGAACTGCTGATTCTGTTGCTGCTAATAATGGACCTAGTCAGGTAGTTGGATGGCCTCCTCTCGGAATACACAGAGCGAAAAGCATTAATTCAAAATCGGCAGCTACCGAGGTGTTCAACTTGAGTTCCGAGAAGAGTGAGAGCAGAAAAACTGATGTGCTAAGGATGAGTGCTGATAAAACCAATGGTAATAACAAAAACATTGATACCAAAGAAAAAAGAAACATCCGGAGTTCCTTGTTTGTCAAGGTAAATATGGACGGCATAGCGATTGGAAGGAAGGTCGATTTGAGTGTCCATAGTTCCTATGAAACCTTAGCTCAAACATTGGAGGATATGTTTAGAGAATCAACTGCAGCAATCACTTTCAATGGATCAAACGGTGAAGACTATGGTATTCTTGTTGGAGGAGATCAACACTCGAAATTTCTGGATGGATCTTCAAAGTTTGTGCTTACATATGAAGACAAGGATGGAGATTGGATGCTTGTTGGAGATGTTCCTTGGGAGATGTTCATTAGCTCAGTGAGGAGGCTAAGAATCATGAGAACATTTGAGGCCAATGGAAATGGACTTGCACCAATATTGGAAGAAAAGAACTGCAGACAGAAAAGCAAGCCCATATAG 963 0.4164 MQGVTIIPTSGSGGGGGSTMSSTLSKEDTNLVLSSEDSSCPEDSELLELGLGLGLSHKPAPKSHTHHHHHARILTAKDFPSSASASSSSSSSSPSSSLSRANNNTTTTSGTKRTADSVAANNGPSQVVGWPPLGIHRAKSINSKSAATEVFNLSSEKSESRKTDVLRMSADKTNGNNKNIDTKEKRNIRSSLFVKVNMDGIAIGRKVDLSVHSSYETLAQTLEDMFRESTAAITFNGSNGEDYGILVGGDQHSKFLDGSSKFVLTYEDKDGDWMLVGDVPWEMFISSVRRLRIMRTFEANGNGLAPILEEKNCRQKSKPI 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151469g00001 320 MobiDBLite consensus disorder prediction 79 132 - -
Stsc151469g00001 320 ProSiteProfiles PB1 domain profile. 191 298 IPR000270 GO:0005515
Stsc151469g00001 320 Gene3D - 186 305 - -
Stsc151469g00001 320 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 47 300 IPR003311 GO:0005634|GO:0006355
Stsc151469g00001 320 MobiDBLite consensus disorder prediction 79 124 - -
Stsc151469g00001 320 MobiDBLite consensus disorder prediction 1 44 - -
Stsc151469g00001 320 Pfam AUX/IAA family 49 301 IPR033389 -
Stsc151469g00001 320 SUPERFAMILY CAD & PB1 domains 185 294 - -
Stsc151469g00001 320 FunFam Auxin-responsive protein 186 306 - -
Stsc151469g00001 320 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151469g00001 Stsc-Chr151469 13667 16960 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151469g00001 162 293 B3 DNA Binding Superfamily AT1G59750 29.545 2.44e-12 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Stsc151469g00001 AUX_IAA 9.3e-56 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151469g00001 K14484 - gmx:100527033 336.65