Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151466g00007 ATGAGTAGACGTGGGAGCAGAACAGTATACGTTGGGAACCTCCCTGGTGATATTCGTGAAAGAGAAGTAGAAGACTTGTTTTCAAAGTATGGACATATAACTCACATTGATCTCAAGGTTCCACCAAGGCCTCCTGGTTATGCATTTGTAGAGTTTGAAGATTATCAAGATGCTGAGGATGCAATTCGAGGGCGTGATGGATATGATTTTGATGGACACCGATTGCGGGTGGAGCCTGCACACGGTGGGCGGGGCCACTCATCTTCGAGAGATCGATATAGTAGTCACAGCAACGGTCGAGGTGGTCGTGGTGTATCTAGGCGCTCGGAATATCGCGTTCTGGTCACTGGATTGCCCTCTTCTGCTTCATGGCAGGATCTTAAAGATCACATGAGAAAGGCTGGGGATGTTTGCTTTTCCCAAGTTTTCCACGACGGAAGAGGAACTACTGGGATTGTGGATTACACAAATTATGATGACATGAAATATGCTATCAAGAAACTTGATGACTCTGAGTTTCGGAATGCATTTTCCCGGGGCTATGTTCGGGTGAGGGAATATGATTCAAGGCGGGATTCCTCTAGAAGTCCTAGTCGGGGCCCATCTCATTCTAGAGGAAGAAGCTATAGTCGCAGCCGTAGCCGCAGTCACAGCCGCAGCCGTAGTTACAGTCGTGGCCGGAGCCCAAGCAAATCTCCAAAGGGGAAGTCGTCACCACGGTCACCAGCTAAATCTCCACCAAGATCTGCTTCCCGTTCTCGTTCCAGATCAAGGTCTCGTTCTTTATCGGGATATGGATACTTGCGGCAAACTGGAAATTGGAAATTAGGAACTTGGTGGGATTTGGTTCAATTGCCTGCAATTCAATTTGTTGTGGAGATTGGGAACCAAGGAGATCATGGATTGCTATTTAGAGCTGGATGTCTTGTGTATTAA 936 0.4744 MSRRGSRTVYVGNLPGDIREREVEDLFSKYGHITHIDLKVPPRPPGYAFVEFEDYQDAEDAIRGRDGYDFDGHRLRVEPAHGGRGHSSSRDRYSSHSNGRGGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRGYVRVREYDSRRDSSRSPSRGPSHSRGRSYSRSRSRSHSRSRSYSRGRSPSKSPKGKSSPRSPAKSPPRSASRSRSRSRSRSLSGYGYLRQTGNWKLGTWWDLVQLPAIQFVVEIGNQGDHGLLFRAGCLVY 311
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc151466g00007 311 CDD RRM1_SF2_plant_like 8 78 - -
Stsc151466g00007 311 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Stsc151466g00007 311 CDD RRM2_SF2_plant_like 111 186 - -
Stsc151466g00007 311 MobiDBLite consensus disorder prediction 186 262 - -
Stsc151466g00007 311 FunFam serine/arginine-rich splicing factor SR34A-like 111 188 - -
Stsc151466g00007 311 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 1 110 - -
Stsc151466g00007 311 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 6 260 - -
Stsc151466g00007 311 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Stsc151466g00007 311 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Stsc151466g00007 311 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Stsc151466g00007 311 Gene3D - 110 188 IPR012677 -
Stsc151466g00007 311 MobiDBLite consensus disorder prediction 73 108 - -
Stsc151466g00007 311 MobiDBLite consensus disorder prediction 206 224 - -
Stsc151466g00007 311 SUPERFAMILY RNA-binding domain, RBD 6 176 IPR035979 GO:0003676
Stsc151466g00007 311 MobiDBLite consensus disorder prediction 225 262 - -
Stsc151466g00007 311 MobiDBLite consensus disorder prediction 73 107 - -
Stsc151466g00007 311 Gene3D - 2 109 IPR012677 -
Stsc151466g00007 311 SMART rrm1_1 8 78 IPR000504 GO:0003723
Stsc151466g00007 311 SMART rrm1_1 112 185 IPR000504 GO:0003723
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc151466g00007 Stsc-Chr151466 26018 30356 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151466g00007 2 195 Eukaryotic Initiation Factors Gene Family AT4G34110 25.123 4.16e-07 49.3
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151466g00007 K12890 - cave:132168829 358.607