Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151466g00006 ATGAGTAGACGTGGGAGCAGAACAGTATACGTTGGGAACCTCCCTGGTGATATTCGTGAAAGAGAAGTAGAAGACTTGTTTTCAAAGTATGGACATATAACTCACATTGATCTCAAGGTTCCACCAAGGCCTCCTGGTTATGCATTTGTAGAGTTTGAAGATTATCAAGATGCTGAGGATGCAATTCGAGGGCGTGATGGATATGATTTTGATGGACACCGATTGCGGGTGGAGCCTGCACACGGTGGGCGGGGCCACTCATCTTCGAGAGATCGATATAGTAGTCACAGCAACGGTCGAGGTGGTCGTGGTGTATCTAGGCGCTCGGAATATCGCGTTCTGGTCACTGGATTGCCCTCTTCTGCTTCATGGCAGGATCTTAAAGATCACATGAGAAAGGCTGGGGATGTTTGCTTTTCCCAAGTTTTCCACGACGGAAGAGGAACTACTGGGATTGTGGATTACACAAATTATGATGACATGAAATATGCTATCAAGAAACTTGATGACTCTGAGTTTCGGAATGCATTTTCCCGGGGCTATGTTCGGGTGAGGGAATATGATTCAAGGCGGGATTCCTCTAGAAGTCCTAGTCGGGGCCCATCTCATTCTAGAGGAAGAAGCTATAGTCGCAGCCGTAGCCGCAGTCACAGCCGCAGCCGTAGTTACAGTCGTGGCCGGAGCCCAAGCAAATCTCCAAAGGGGAAGTCGTCACCACGGTCACCAGCTAAATCTCCACCAAGATCTGCTTCCCGTTCTCGTTCCAGATCAAGGTCTCGTTCTTTATCGGGATCACGATCAAGGTCTAGGTCTCCGTTACCCGTGCGTAACAAAAGCCCAAAAAGACGCAGTGCTAGCAGGAGTCCAAGTAGGAGCAGGAGCAGGAGCAAGAGTTTGTCCCGGTGA 906 0.4945 MSRRGSRTVYVGNLPGDIREREVEDLFSKYGHITHIDLKVPPRPPGYAFVEFEDYQDAEDAIRGRDGYDFDGHRLRVEPAHGGRGHSSSRDRYSSHSNGRGGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRGYVRVREYDSRRDSSRSPSRGPSHSRGRSYSRSRSRSHSRSRSYSRGRSPSKSPKGKSSPRSPAKSPPRSASRSRSRSRSRSLSGSRSRSRSPLPVRNKSPKRRSASRSPSRSRSRSKSLSR 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151466g00006 301 CDD RRM1_SF2_plant_like 8 78 - -
Stsc151466g00006 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Stsc151466g00006 301 MobiDBLite consensus disorder prediction 186 301 - -
Stsc151466g00006 301 Gene3D - 2 109 IPR012677 -
Stsc151466g00006 301 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 1 110 - -
Stsc151466g00006 301 CDD RRM2_SF2_plant_like 111 186 - -
Stsc151466g00006 301 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 6 267 - -
Stsc151466g00006 301 SUPERFAMILY RNA-binding domain, RBD 6 176 IPR035979 GO:0003676
Stsc151466g00006 301 MobiDBLite consensus disorder prediction 275 290 - -
Stsc151466g00006 301 FunFam serine/arginine-rich splicing factor SR34A-like 111 188 - -
Stsc151466g00006 301 Gene3D - 110 188 IPR012677 -
Stsc151466g00006 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Stsc151466g00006 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Stsc151466g00006 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Stsc151466g00006 301 MobiDBLite consensus disorder prediction 73 108 - -
Stsc151466g00006 301 MobiDBLite consensus disorder prediction 206 224 - -
Stsc151466g00006 301 MobiDBLite consensus disorder prediction 73 107 - -
Stsc151466g00006 301 MobiDBLite consensus disorder prediction 225 250 - -
Stsc151466g00006 301 SMART rrm1_1 8 78 IPR000504 GO:0003723
Stsc151466g00006 301 SMART rrm1_1 112 185 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151466g00006 Stsc-Chr151466 25992 30362 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151466g00006 2 195 Eukaryotic Initiation Factors Gene Family AT4G34110 25.123 6.86e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151466g00006 K12890 - gmx:100789847 339.347