Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151466g00001 ATGTCATCTGCAACAACTGCACCGTGGATCACTTCCCTGTCGTGTGCATCCCAAGCTTCAGGGGAGACTCTACCTCAATGGCTGAGATTCATTTTCCTCTCTCCATGTCCTCAGAGAGCTATGCTGTCTGCCATTGATGTCATACTCTTGCTCATTCTCTTTGTGTTTGCCGTGATCAAGCTCTATTCTAGGTTCACCTCCTCCACCAATGAACTCAACAAGCCACTTATCATAGATAATAACACACCCTCCTTTGTCACAGTAACCGTATGGTTTAAGCTTACTTTAATTGTGACTTCTGTTTTGGCCTTATTGTACACCATTGCTTGTGTTCTGGTATTTACCAGTTCAACTGAGATTCCATGGAAACAAGTAGATGGAATGTTTTGGTTAGTCCAGGCAATAACACACTTAGTACTTGCAGTCTTAATCATCCATGAGAAAAGATTCCAAGCTGTAACTCATCCTCTAACTCTTAGAGTTTATTGGATTGTGTATTTTATTTGTACTTGTTTGTTTGTGGCTTCTGGTGTAATACGTTTGGTCTCTGTGGATGTGGATGGAACCAAAGAGTTCATATTCAAGGTGGATGACATAGTTTCTTTCACATCCCTGCCTCTCTCGCTGTTTCTTCTCTTTGTGGCATTCAAAGGGTCCACCGGCATTTCGAATGAGGAAACACAATCACTTGCTGATGAGCAAACTAAGCTATATGATGATGATACTCTGGAAAAATCTGGAGTCACTGCCTATGCTTCGGCTTCTATAGTATCCAAGGCATTTTGGATTTGGATAAACCCTTTGTTGAGTAAAGGGTACAAGTCCCCATTGAAGATGGATGAGATTCCAACCCTTTCACCCGAGCATAGAGCTGAGAGGATGTCTGTTATCTTCGAATCAAAATGGCCAAAATCAAATGAAAGGACGAAGCATCCAGTTCGAGTCGCATTGATCCGGTGCTTCTGGAAGGAATTGGCCTTCACTGCATTCATTGCTGTTGTTAGGATCTGTGTCATGTTTGTGGGGCCAGTTCTCATACAAAGATTTGTTGATTTCACTTCAGGGAAGGGAAGTTCTGTTTATGAAGGGTACTACCTAGTGTCGATCCTCCTTGTTGCTAAGTTTGTGGAAGTTATGTGCACTCACCATTTCAACTTCAATGCTCAGAAGCTTGGAATGCTTATCCGATGCACACTCATCACTTCTCTGTACAAGAAGGGCCTGAAGCTTTCTTGCTCCTCAAGGCAAGATCATGGTATTGGGACTATTGTGAATTACATGGCTGTTGATGCACAGCAACTCTCTGATATGATGCTTCAGTTGCATTCCGTGTGGGTGACTCCACTTCAAGTCACTGTTGCCTTGTTTCTACTTTATAATGTGTTGGGTGCCTCTGTAGTTACGGCCTTACTTGGTCTTCTTGGTGTTCTTGTGTTTGCTGTGGTTGGCACAAAGAGAAACAACTATTTCCAATTCAATGTGATGAGGAATCGCGACTCGAGAATGAAAGCCATGAATGAGATGCTTAGCTACATGCGTGTGATCAAGTTCCAGGCTTGGGAGGAGCATTTCAATGGGAGAATAATGGGGTTCCGTGAGTCAGAGTTTAAGTGGTTGTCAAAGTTCATGTTCTCGGTTTGTGGCAACATTGTTGTGATGTGGAGCACACCATTGTTGATATCAACTCTAACATTCGGCGCAGCTCTTCTGCTTGGAGTTAAGCTCGACACAAGCACAGTTTTCACCACAACAACAATATTTAAGATCTTGCAGGAACCAATTAGGACGTTTCCACAGTCTATGATATCTCTTTCACAGGCAATGATATCGCTGGGAAGGCTAGACAGATACATGTTGAGCAGGGAATTGTCAAATGATTCGGTTGAAAGAGAGGAAGGCTGTGGTGGAAACACTGCTGTGGAGGTCTTTGATGGGACCTTCAGCTGGGATGATGACAGCCTACAGCATGACTTGAAGAATATCAATCTGGAGATCAGAAAAGGGGATCTTACAGCAATTGTTGGGACTGTAGGCTCTGGAAAGTCATCTCTCTTGGCATCAATTCTTGGTGAAATGCGCAAAGTTTCTGGAAAGGTTCGGGTTTGTGGAAGTACTGCTTATGTTGCACAGACATCTTGGATTCAGAATGGGACCATTGAGGAAAACATTCTCTTTGGCATGCCAATGAACAGACACAAGTACAATGAAGTCATCAGAGTTTGTTGCCTGGAGAAAGATTTGGAAATGATGGAATTTGGGGATCAGACTGAGATCGGAGAGCGCGGCATCAACCTCAGCGGTGGACAGAAGCAGCGTATACAACTTGCCAGGGCTGTGTTCCAAGACTGTGATATCTATCTTCTTGATGATGTCTTTAGTGCTGTTGATGCTCACACTGGTTCTGAAATATTTAAGGAATGTGTGAGGGGGGCTTTAAAAGGAAAGACTGTAATCCTTGTAACACACCAAGTAGATTTTTTACATAATGTTGATCTTATATTGGTCATGAAGGATGGAATGATAGTCCAATCAGGAAAATATGATGATTTACTAGATTCTGGACTGGATTTCAAAGCTTTGGTTGTTGCACACGAAACCTCCATGGAAGTAGTAGAGCAAGGCGCAAGCACTTCTGGTGAAAATGTGAATGGTCCTTCAAAATCTCCAAGAGAAGCTTCTGGTCAGAGAGGAGCCAATGGTGAGAGCAATTCTGTTGATCAGGCAAAGTCCGGGAAGGGAAGTTCTAAACTGATAAAAGAAGAGGAAAGGGAAACAGGCAAAGTTAGCTTGCATATGTACAAACTGTACTTGACTGAGGCTTTTGGGTGGTGGGGCATTACAGGAGTATTGATTCTTTCTGTGCTGTGGCAAGCATCTTTGATGGCAAGTGATTATTGGCTAGCATATGAAACATCAGAAGAGCGTGCTCAAGTGTTCAACCCTTCTCTCTTCATTTCTGTCTATGCAATCATCACTCTTGTTTCAGTTATTTTGGTAGTTATAAGATCCTACTCATACACATTCATGGGGCTAAAGACTGCACAACTTTTCTTCACTCAAATTCTTAATAGCATCCTTCATGCACCCATGTCTTTCTTTGACACTACACCATCCGGGAGAATTCTAAGTAGGGCATCCACTGACCAGACCAATGTTGATGCTCTTCTTCCATTGTTTCTGGGAATTGTTATTGCCATGTACATTACAGTGCTCAGCATCTTCATAGTCACCTGTCAAAATGCATGGCCAACAGCATTCTTGTTGATTCCTCTTGTTTGGTTGAACATATGGTACCGGGCTTATTTTCTTGCTTCATCTCGCGAGATAACTCGACTTGATCAAATTACCAAAGCGCCTGTTATTCATCACTTCTCTGAAACCATTTCGGGGGTGATGACTGTCCGAGCATTCAGAAAGCAGAAGAGGTTTACCGAAGAGAATGTTAGACGGGTGAATGCTAATTTAAGAATGGATTTCCACAACTATTGTTCCAATGAATGGTTGGGATTCCGCTTGGAATTGTTTGGAAGCTTGGTGTTCTGCATTTCAGCCATGTTCATGATCCTCTTACCTAGCAATGTCATAAAGCCAGAAAATGTTGGTTTATCTCTTTCTTATGGTTTGTCATTAAATGGGGTCTTGTTCTGGGCGGTGTACATGAGCTGCACCATTGAAAACAAAATGGTATCCGTTGAGCGGATAAAACAGTTTACAAATATTCCATCAGAACCTTCATGGATCATTAAGGATCGTTTGCCTCCTTCTAATTGGCCAGGTCAAGGCAATGTTGATATCAAAGACTTGCAGGTTCGGTATCGTCCAAACACTCCTCTGGTTCTCAAGGGCATCACTCTAAGCATTAATGGAGGAGAAAAGATTGGTGTTGTAGGCCGAACAGGAAGTGGAAAATCAACTCTAATTCAAGTTTTCTTCAGGCTGGTGGAACCTTCAGGAGGCAAAATAATTGTTGATGGCATTGACATATCCATGTTGGGGCTTCATGATCTAAGATCTCGCTTTGGTATCATTCCTCAGGAGCCTGTCCTTTTCGAAGGAACTGTCAGAAGCAATATTGATCCAACTGGACAGTACACAGATGAAGATATATGGAAGAGTTTGGAAAGGTGTCAACTAAAAGAGGCAGTGGCTTCTAAGCCTGAAAAACTTGACTCCTTAGTGATAGATAATGGAGAGAACTGGAGTGTGGGGCAGAGGCAGTTGCTTTGTTTAGGGCGCGTTATGCTTAAGCGAAGCCGGCTCTTGTTTATGGACGAAGCAACTGCTTCTGTTGATTCTCAAACCGATGGGGTGATTCAGAGGATCATAAGAGAGGACTTTGCAGCATGTACCATCATCAGCATTGCTCACAGAATACCCACAGTGATGGACTGTGATAGAGTTTTAGTGGTAGATGCAGGGAGAGCAAAAGAATTTGATAAGCCTTCAAACTTGCTTCAAAGGCCATCTCTGTTTGGGGCATTGGTTCAAGAGTATGCTAGCCGTTCCACAGGACTATAA 4518 0.4283 MSSATTAPWITSLSCASQASGETLPQWLRFIFLSPCPQRAMLSAIDVILLLILFVFAVIKLYSRFTSSTNELNKPLIIDNNTPSFVTVTVWFKLTLIVTSVLALLYTIACVLVFTSSTEIPWKQVDGMFWLVQAITHLVLAVLIIHEKRFQAVTHPLTLRVYWIVYFICTCLFVASGVIRLVSVDVDGTKEFIFKVDDIVSFTSLPLSLFLLFVAFKGSTGISNEETQSLADEQTKLYDDDTLEKSGVTAYASASIVSKAFWIWINPLLSKGYKSPLKMDEIPTLSPEHRAERMSVIFESKWPKSNERTKHPVRVALIRCFWKELAFTAFIAVVRICVMFVGPVLIQRFVDFTSGKGSSVYEGYYLVSILLVAKFVEVMCTHHFNFNAQKLGMLIRCTLITSLYKKGLKLSCSSRQDHGIGTIVNYMAVDAQQLSDMMLQLHSVWVTPLQVTVALFLLYNVLGASVVTALLGLLGVLVFAVVGTKRNNYFQFNVMRNRDSRMKAMNEMLSYMRVIKFQAWEEHFNGRIMGFRESEFKWLSKFMFSVCGNIVVMWSTPLLISTLTFGAALLLGVKLDTSTVFTTTTIFKILQEPIRTFPQSMISLSQAMISLGRLDRYMLSRELSNDSVEREEGCGGNTAVEVFDGTFSWDDDSLQHDLKNINLEIRKGDLTAIVGTVGSGKSSLLASILGEMRKVSGKVRVCGSTAYVAQTSWIQNGTIEENILFGMPMNRHKYNEVIRVCCLEKDLEMMEFGDQTEIGERGINLSGGQKQRIQLARAVFQDCDIYLLDDVFSAVDAHTGSEIFKECVRGALKGKTVILVTHQVDFLHNVDLILVMKDGMIVQSGKYDDLLDSGLDFKALVVAHETSMEVVEQGASTSGENVNGPSKSPREASGQRGANGESNSVDQAKSGKGSSKLIKEEERETGKVSLHMYKLYLTEAFGWWGITGVLILSVLWQASLMASDYWLAYETSEERAQVFNPSLFISVYAIITLVSVILVVIRSYSYTFMGLKTAQLFFTQILNSILHAPMSFFDTTPSGRILSRASTDQTNVDALLPLFLGIVIAMYITVLSIFIVTCQNAWPTAFLLIPLVWLNIWYRAYFLASSREITRLDQITKAPVIHHFSETISGVMTVRAFRKQKRFTEENVRRVNANLRMDFHNYCSNEWLGFRLELFGSLVFCISAMFMILLPSNVIKPENVGLSLSYGLSLNGVLFWAVYMSCTIENKMVSVERIKQFTNIPSEPSWIIKDRLPPSNWPGQGNVDIKDLQVRYRPNTPLVLKGITLSINGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGKIIVDGIDISMLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTGQYTDEDIWKSLERCQLKEAVASKPEKLDSLVIDNGENWSVGQRQLLCLGRVMLKRSRLLFMDEATASVDSQTDGVIQRIIREDFAACTIISIAHRIPTVMDCDRVLVVDAGRAKEFDKPSNLLQRPSLFGALVQEYASRSTGL 1505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151466g00001 1505 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1256 1496 IPR027417 -
Stsc151466g00001 1505 SUPERFAMILY ABC transporter transmembrane region 316 618 IPR036640 GO:0005524|GO:0016020
Stsc151466g00001 1505 CDD ABCC_MRP_domain1 640 839 - -
Stsc151466g00001 1505 FunFam ABC transporter C family member 4 623 882 - -
Stsc151466g00001 1505 FunFam ABC transporter C family member 3 1246 1497 - -
Stsc151466g00001 1505 FunFam ABC transporter C family member 10 309 622 - -
Stsc151466g00001 1505 MobiDBLite consensus disorder prediction 872 918 - -
Stsc151466g00001 1505 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 639 860 IPR027417 -
Stsc151466g00001 1505 SMART AAA_5 1289 1473 IPR003593 GO:0016887
Stsc151466g00001 1505 SMART AAA_5 667 848 IPR003593 GO:0016887
Stsc151466g00001 1505 Pfam ABC transporter 658 791 IPR003439 GO:0005524
Stsc151466g00001 1505 SUPERFAMILY ABC transporter transmembrane region 933 1243 IPR036640 GO:0005524|GO:0016020
Stsc151466g00001 1505 Gene3D ABC transporter type 1, transmembrane domain 909 1244 IPR036640 GO:0005524|GO:0016020
Stsc151466g00001 1505 Gene3D ABC transporter type 1, transmembrane domain 305 619 IPR036640 GO:0005524|GO:0016020
Stsc151466g00001 1505 CDD ABC_6TM_ABCC_D2 946 1238 IPR044726 GO:0140359
Stsc151466g00001 1505 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 640 863 IPR003439 GO:0005524
Stsc151466g00001 1505 CDD ABCC_MRP_domain2 1261 1481 - -
Stsc151466g00001 1505 Gene3D - 620 882 IPR027417 -
Stsc151466g00001 1505 Pfam ABC transporter 1280 1428 IPR003439 GO:0005524
Stsc151466g00001 1505 ProSitePatterns ABC transporters family signature. 765 779 IPR017871 GO:0005524|GO:0016887
Stsc151466g00001 1505 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 326 606 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc151466g00001 1505 CDD ABC_6TM_ABCC_D1 327 614 IPR044746 GO:0140359
Stsc151466g00001 1505 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1263 1497 IPR003439 GO:0005524
Stsc151466g00001 1505 Pfam ABC transporter transmembrane region 327 593 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc151466g00001 1505 Pfam ABC transporter transmembrane region 979 1204 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc151466g00001 1505 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 948 1226 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc151466g00001 1505 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 252 1498 - -
Stsc151466g00001 1505 FunFam ABC transporter C family member 5 909 1244 - -
Stsc151466g00001 1505 MobiDBLite consensus disorder prediction 872 911 - -
Stsc151466g00001 1505 Gene3D - 1247 1495 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151466g00001 Stsc-Chr151466 4279 9880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151466g00001 658 856 Calmodulin-binding Proteins AT2G36910 33.023 6.99e-24 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151466g00001 - K05666 gmx:100793361 2428.67