Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151450g00003 ATGGGCCATTGCTGCAGCAAGAGCGTCGCCGTCGAAAACGAGGGCGCCTCCGCCAATCACCACGTCAAACCGCCGCACGTCTCGCCGGCGCCGGTCATAGTCGGGAACAATTCCGTGTCTGGCTTCAGCGATGCCTCAACGGCCACTCCTGGGAGGAGTACTCCGGCGAACTCTTTCTCTACAAGCCCCTTCACAAGTCCGCTTCCCCCGGGGGTGGCGCCGTCGCCGGCTGCTAAGACTCCAGGACGAAAATTCCGTTGGCCTCTGCCACCCCCGTCACCGGCGAAGCCGATCATGGCGGCGCTGCTGCGGAGGCAGGGGAAGACGAAGCCAAAAGATGGTCCCATACCGGAGGAGCAAGGTGAAGGTGGTGGCGGTGGTGCCGGCGCAGAAGGTGGAGAGAGGTCCCTTGATAAGAGCTTTGGTTATGGTAAGAACTTTGGTGCGAAGTTCGAGCTAGGGAAGGAAGTGGGTCGAGGGCATTTTGGTCATACTTGCTGGGCCAAAGGGAAGAAGGGTGACCTTAAGGGTCAATCAGTTGCCGTTAAAATCATATCTAAAGCCAAGATGACTTCAGCAATAGCAATTGAAGATGTTAGGAGGGAGGTGAAAATGTTGAAGGCCTTATCTGGTCATAAAAATTTGGTCAAGTTTCATGATGCATTTGAGGATGTCAATAATGTCTACATAGTAATGGAATTGTGCGAGGGTGGAGAACTACTTGACAGAATTCTAGATAGAGGTGGAAGATACACAGAGGATGATGCCAAAGCTATTATTTTACAAATTCTAGATGTAGTTGCCTTTTGCCATCTCCAAGGAGTTGTACATCGTGATCTTAAACCAGAGAATTTCCTTTTCGTATCAAAACAAGAGGATGCTTTGATGAAAGCCATCGATTTTGGTCTATCGGATTTTGTTAGACCAGATCAACGCCTTAATGATATTGTTGGCAGTGCCTACTATGTCGCCCCTGAAGTTCTGCATAGATCTTACAGTGTTGAAGCAGACTTATGGAGTATTGGAGTTATATCATACATATTGTTATGTGGCAGTAGACCATTTTGGGCGCGCACTGAATCAGGAATATTCCGGTCTGTGTTAAGAGCAAATCCTAACTTTGATGATACACCTTGGCCATCAATATCACCAGAAGCTAAAGACTTTGTTAAGAGACTATTGAACAAGGACCACAGGAAAAGAATGACTTCTGCCCAAGCTCTAACTCATCCATGGTTGAGGAATGAAAACGTTCCCATTCCGTTAGATATTTTGATTTACAAGTTAGTCAAGTCGTACGTGCGTGCCTCACCTTTGAAGCGTGCTGCATTGAAGGCTCTCTCAAAAGCATTGACAGAAGATGAACTTATTTACCTTAGAGCGCAGTTTAGCCTATTGGAACCAAAAGATGGCTATGTTTCACTTGATAATTTTAGAGGGGCTCTTATGAAAAATTCAACTGATGCCATGAAGGAATCAAGGGTCCCTGAGATTTTACATTTGATGGAACCATTGTCGTACAAAAAAATGGACTTCGAAGAGTTCTGCGCTGCTGCAATCAGTGTATACCAGCTGGAGGTTCATCCGGAATGGGACAACATAGCTACCACAGCATTTGAGCATTTTGAAGAGGCAGGGAACCGAGTCATTTCAGTAGAGGAGTTGGCACAGGAGATGAGTTTGGGACCTTCTGCTTATGCTCTAATGGGTGATTGGATCAGAAGATCGGATGGAAAACTAAGCTTCGTCGGATTCACAAAGTTTTTGCACGGCGTCACGCTTCGGAGTTCGAACACTAGACATCACAGACCGGTAGTATAG 1821 0.4695 MGHCCSKSVAVENEGASANHHVKPPHVSPAPVIVGNNSVSGFSDASTATPGRSTPANSFSTSPFTSPLPPGVAPSPAAKTPGRKFRWPLPPPSPAKPIMAALLRRQGKTKPKDGPIPEEQGEGGGGGAGAEGGERSLDKSFGYGKNFGAKFELGKEVGRGHFGHTCWAKGKKGDLKGQSVAVKIISKAKMTSAIAIEDVRREVKMLKALSGHKNLVKFHDAFEDVNNVYIVMELCEGGELLDRILDRGGRYTEDDAKAIILQILDVVAFCHLQGVVHRDLKPENFLFVSKQEDALMKAIDFGLSDFVRPDQRLNDIVGSAYYVAPEVLHRSYSVEADLWSIGVISYILLCGSRPFWARTESGIFRSVLRANPNFDDTPWPSISPEAKDFVKRLLNKDHRKRMTSAQALTHPWLRNENVPIPLDILIYKLVKSYVRASPLKRAALKALSKALTEDELIYLRAQFSLLEPKDGYVSLDNFRGALMKNSTDAMKESRVPEILHLMEPLSYKKMDFEEFCAAAISVYQLEVHPEWDNIATTAFEHFEEAGNRVISVEELAQEMSLGPSAYALMGDWIRRSDGKLSFVGFTKFLHGVTLRSSNTRHHRPVV 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151450g00003 606 FunFam CDPK-related kinase 1 449 520 - -
Stsc151450g00003 606 FunFam CDPK-related kinase 1 144 239 - -
Stsc151450g00003 606 SUPERFAMILY Protein kinase-like (PK-like) 150 437 IPR011009 -
Stsc151450g00003 606 SMART serkin_6 151 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151450g00003 606 SUPERFAMILY EF-hand 446 591 IPR011992 -
Stsc151450g00003 606 CDD STKc_CAMK 150 412 - -
Stsc151450g00003 606 ProSitePatterns Serine/Threonine protein kinases active-site signature. 275 287 IPR008271 GO:0004672|GO:0006468
Stsc151450g00003 606 FunFam Calcium-dependent protein kinase SK5 323 418 - -
Stsc151450g00003 606 Pfam Protein kinase domain 151 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151450g00003 606 Gene3D Transferase(Phosphotransferase) domain 1 241 429 - -
Stsc151450g00003 606 ProSiteProfiles Protein kinase domain profile. 151 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151450g00003 606 Gene3D - 430 588 - -
Stsc151450g00003 606 PANTHER SERINE/THREONINE-PROTEIN KINASE 136 569 - -
Stsc151450g00003 606 MobiDBLite consensus disorder prediction 43 66 - -
Stsc151450g00003 606 Gene3D - 452 520 - -
Stsc151450g00003 606 MobiDBLite consensus disorder prediction 107 135 - -
Stsc151450g00003 606 ProSitePatterns Protein kinases ATP-binding region signature. 157 183 IPR017441 GO:0005524
Stsc151450g00003 606 Gene3D Phosphorylase Kinase; domain 1 145 240 - -
Stsc151450g00003 606 MobiDBLite consensus disorder prediction 43 94 - -
Stsc151450g00003 606 FunFam CDPK-related kinase 3 143 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151450g00003 Stsc-Chr151450 19075 27635 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151450g00003 1 596 EF-hand Containing Proteins AT3G50530 58.050 0.0 723
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Stsc151450g00003 Pkinase 2e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151450g00003 K13412 - gmx:100794478 1008.44