Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151449g00002 ATGGCTTCCACCACCACTCATAATAAACTCATCACCTTCTTCTTTTCCCTCACACTCTTTTTCCTCTCCTCACACACTCATCCTACTACTCTTCTTCACTCTTCAAATTCTTCCACACTATTCCACACCAATAATTTAAGATCCTTCTGCAAAACCACCCCTTACCCAGAAACATGCTTGGATTCACTAAAGCTTTCAATCTCAATAAACATAAGCCCAAACATCATCACCTACCTCCTTCACTCCCTCCAAGTTGCGATCTCCGAAGTCACAAAGCTATCAACACTCTTCCACACTGATGTTAACATCGTTGAGAAACAAAAGGGTTCAATCCAAGACTGCAAGGAGCTTCACCAATCAACTCTAACATCCCTAAAGAGATCCCTCTCCGGGGTTCGTAACTCACGAAGATTGGGTGATGCAAGAACCTACCTCAGTGCTGCACTCACTAACAAGAACACTTGTCTTGAAGGACTAGATTCTGCTTCCGGACCCATGAAACAAAAGCTAGTAAACTCTGTTATCAACACTTACAAGCACGTGAGTAACTCCCTCTCAATGCTCTCTAATAATCAAGGAAGTGATGACAAAAACAATGGTAAGAGAAGCACTAACAATGATGATGATGATGAGTATGATCCAAGCGAGGTGATTGTTGTGGCGAAAGATGGAACAGGAAACTTCAGCAGTGTGAGTGATGCAGTAAACTTTGCTCCGAATAACAGCTATGTGAGGACAGTGATCTATGTGAGAGAAGGGGTTTATGAGGAAAATGTAGAGATCCCAAGTTGGAAGACAAACATTGTTGTTGTTGGAGATGGGAGTGACGTCACTGTCATAAGTGGTAGCAGAAGTGTTGGTGATGGATGGACCACTTTCAGATCTGCAACTCTAGCTGTATCTGGTGATGGCTTTCTAGCACGTGACATAGCAATTGAGAACAGTGCAGGCCCAGAGAAGCATCAAGCAGTTGCATTAAGAGTGAACGCAGATTTAACCGCTTTCTACCGGTGTTCCATTTATGGTTACCAAGACACGCTGTATGTTCACTCCTTCAGACAATTCTACAGAGAATGTGACATTTACGGAACAGTAGATTTCATATTCGGTAATGCCGCGGTAGTTCTACAAGAATGTAACATTGTTTCTAGAAAGCCGTTACCCGGCCAATTCACCGTTGTAACGGCGCAATCGAGGGACACGCCGGACGAGGACACCGGAATCTCCATCCAGAACTGCTCTATTATAGCTGCAAATGATTTGTACGAAGCTAATTCAAACTCCAGCACCAATACCATTAAGAGTTACCTTGGTAGGCCATGGAGGTCTTATTCAAGAGTTGTTTATCTTGAGTCTTACATTGATGAGTTTATTGACCCAAAGGGTTGGTCAAAGTGGTCTAATAGTGATGGTAATGGGGATCAAGGCTTGGATACTCTGTATTATGGGGAGTATGAGAATTATGGACCTGGTTCAAGAACAAATGGACGTGTGAATTGGGGTGGGTACCATGTGATGGATTACAATGATGCTTATAACTTCACGGTTTCAGAGTTCATTACTGGTGATGCTTGGCTTGGCTCTACTTCTTTTCCTTATGATGATGGAATCTAA 1614 0.4294 MASTTTHNKLITFFFSLTLFFLSSHTHPTTLLHSSNSSTLFHTNNLRSFCKTTPYPETCLDSLKLSISINISPNIITYLLHSLQVAISEVTKLSTLFHTDVNIVEKQKGSIQDCKELHQSTLTSLKRSLSGVRNSRRLGDARTYLSAALTNKNTCLEGLDSASGPMKQKLVNSVINTYKHVSNSLSMLSNNQGSDDKNNGKRSTNNDDDDEYDPSEVIVVAKDGTGNFSSVSDAVNFAPNNSYVRTVIYVREGVYEENVEIPSWKTNIVVVGDGSDVTVISGSRSVGDGWTTFRSATLAVSGDGFLARDIAIENSAGPEKHQAVALRVNADLTAFYRCSIYGYQDTLYVHSFRQFYRECDIYGTVDFIFGNAAVVLQECNIVSRKPLPGQFTVVTAQSRDTPDEDTGISIQNCSIIAANDLYEANSNSSTNTIKSYLGRPWRSYSRVVYLESYIDEFIDPKGWSKWSNSDGNGDQGLDTLYYGEYENYGPGSRTNGRVNWGGYHVMDYNDAYNFTVSEFITGDAWLGSTSFPYDDGI 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151449g00002 537 SMART PMEI_2 41 187 IPR006501 GO:0004857
Stsc151449g00002 537 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 45 189 IPR035513 -
Stsc151449g00002 537 Gene3D - 213 537 IPR012334 -
Stsc151449g00002 537 FunFam Pectinesterase 212 537 - -
Stsc151449g00002 537 PANTHER PECTINESTERASE 27 527 - -
Stsc151449g00002 537 MobiDBLite consensus disorder prediction 186 213 - -
Stsc151449g00002 537 NCBIfam pectinesterase inhibitor domain 13 190 IPR006501 GO:0004857
Stsc151449g00002 537 Pfam Plant invertase/pectin methylesterase inhibitor 46 187 IPR006501 GO:0004857
Stsc151449g00002 537 SUPERFAMILY Pectin lyase-like 214 534 IPR011050 -
Stsc151449g00002 537 CDD PMEI-like_3 48 190 - -
Stsc151449g00002 537 ProSitePatterns Pectinesterase signature 2. 361 370 IPR033131 -
Stsc151449g00002 537 Pfam Pectinesterase 218 523 IPR000070 GO:0030599|GO:0042545
Stsc151449g00002 537 Gene3D Invertase/pectin methylesterase inhibitor family protein 41 190 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151449g00002 Stsc-Chr151449 23845 27233 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151449g00002 28 537 Carbohydrate Esterase AT2G26440 63.265 0.0 690
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151449g00002 - - aip:107630581 871.692