Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151449g00001 ATGGCATTTCAAGATTTTGACATCATTAACGAACGGAGACAACAAGAAAGGAGGAAAAGGATAAGGAATAGGATCGTCATCGGCCTAGTATCCACCATTCTTCTTGTATCCATTGTCGGCGCAGTCGCCTACGTCGGACTCAATTCTAAGTCATCCGATGGTGGCAGCGGTGGCGGCAGAGGTGGGAGTAACAAAAGCAAGTCATCGGCAAAGCCGAGTAACAAGCCTTCCTCCTCCTCTTCGTCGGACTCCACCTCGACCTCCTCAGCCAAATCAATAGAAGCATCATCCAAGATGGTGAAAGTCATATGCGAAGCTGCAGAGTATAAAGAGAAATGCGAAGGCGCGCTTGGTGATGCCGTTAAGAACGACTCGAGTATAACACAACCGAAAGATCTCCTCAGAGTCTCCATAAAACTGGCTCAGGACGAGCTATTCGACGACGCCAAGGAAGAACTCGGCCTCTCTATCGACGAGATTACCAGCGCTGATGATCTCAAGAAGCTTTCCACAAAAGCACCTGAACTCAACAACTGGCTGAGTGCGGTTATCTCTTACCACCAAACCTGCATTGATGGGTTTCCTGATGGGGAATTGAAGACCAAGCTTAAGGATCTCTTTAAGGATTCACAAGAATTTGTTAGCAATTCGCTCTCCATTGTAACGGCCGCGTCCACGGTGCTTTCTGCCGTGCAATCAGTTATAACTCGCCACTTGCTTTCGGAGAAGAACGGCAGCGATCCTCATTGGATCAGCCGCGACGATCGGAGGATTCTGAAGGCGGCAGACGACAAGCCCATACCGAACGTGACCGTGGCAAAAGATGGCAGCGGCCAGTTCAAAACGATCTCTGAAGCCTTGGCAGCCATCCCAGAAAGATATGATGGAAGGTACGTGGTTTACGTTAAAGAAGGAATATACGAGGAGACAGTGACAGTCACAAAGAGAATGGAAAATATGACAATGTATGGTGATGGATCACAAAAGAGTATCATCACTGGCAGCAAAAATTTTGTAGACGGAGTTAGGACTTTCCAAACTGCAACCTTTGTGGTGCTTGGAAACGGGTTCTTGGGCAAAGCAATGGGATTTAGAAACACTGCTGGGGCAGAGAAGCATCAAGCAGTGGCAGCGAGAGTGCAAGCAGACCGTGCAATTTTCGTTAACTGTCGCTTCGAGGGCTTCCAAGACACGCTATACGCCCAAACCCACCGCCAATTCTACCGGAGCTGCGTCATCTCCGGCACCGTGGACTTCATCTTCGGCGACGCAACCGCCATTTTCCAGAACTGCATCATGGCAATCAGAAAACCAATGGACAATCAACAAAACATCGTAACCGCTAATGGCAGGTTCGACCAGAAGGAGACAACCGGCTTCGTTCTTCAAAAGTGCGAGATCAAAGCCGACGACAGGCTTCCTCCCGAGAAGGACAAGATTAAGAGCTACCTTGGGAGGCCATGGAAGGAGTACTCGAGAACCATTGTAATGGAATCCGATATCGGCGACTTAATTAGCCCCGATGGGTGGATGCCTTGGGATGGTGACTTTGCACTGAATACGTTGTATTACGGTGAGTTCAACAACACAGGGCCTGGTGGGAGCACCAATGCGAGGGTGAACTGGCTTGGCCATAAAGTTCTTAGCAAAGATGAGGCTAGCAAGTTCACTGTAGGAACTTTCTTGGAAGGAGCATGGATTAGTGGTAGAGGTGTACCAGCTCAATTGGGCATGTACAGTTGA 1743 0.4905 MAFQDFDIINERRQQERRKRIRNRIVIGLVSTILLVSIVGAVAYVGLNSKSSDGGSGGGRGGSNKSKSSAKPSNKPSSSSSSDSTSTSSAKSIEASSKMVKVICEAAEYKEKCEGALGDAVKNDSSITQPKDLLRVSIKLAQDELFDDAKEELGLSIDEITSADDLKKLSTKAPELNNWLSAVISYHQTCIDGFPDGELKTKLKDLFKDSQEFVSNSLSIVTAASTVLSAVQSVITRHLLSEKNGSDPHWISRDDRRILKAADDKPIPNVTVAKDGSGQFKTISEALAAIPERYDGRYVVYVKEGIYEETVTVTKRMENMTMYGDGSQKSIITGSKNFVDGVRTFQTATFVVLGNGFLGKAMGFRNTAGAEKHQAVAARVQADRAIFVNCRFEGFQDTLYAQTHRQFYRSCVISGTVDFIFGDATAIFQNCIMAIRKPMDNQQNIVTANGRFDQKETTGFVLQKCEIKADDRLPPEKDKIKSYLGRPWKEYSRTIVMESDIGDLISPDGWMPWDGDFALNTLYYGEFNNTGPGGSTNARVNWLGHKVLSKDEASKFTVGTFLEGAWISGRGVPAQLGMYS 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151449g00001 580 SMART PMEI_2 95 220 IPR006501 GO:0004857
Stsc151449g00001 580 MobiDBLite consensus disorder prediction 52 91 - -
Stsc151449g00001 580 FunFam Pectinesterase 263 578 - -
Stsc151449g00001 580 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 98 222 IPR035513 -
Stsc151449g00001 580 Pfam Pectinesterase 269 564 IPR000070 GO:0030599|GO:0042545
Stsc151449g00001 580 CDD PMEI-like_3 103 226 - -
Stsc151449g00001 580 Gene3D Invertase/pectin methylesterase inhibitor family protein 143 224 IPR035513 -
Stsc151449g00001 580 Gene3D - 265 578 IPR012334 -
Stsc151449g00001 580 Pfam Plant invertase/pectin methylesterase inhibitor 100 220 IPR006501 GO:0004857
Stsc151449g00001 580 ProSitePatterns Pectinesterase signature 2. 413 422 IPR033131 -
Stsc151449g00001 580 PANTHER PECTINESTERASE 34 568 - -
Stsc151449g00001 580 SUPERFAMILY Pectin lyase-like 269 568 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151449g00001 Stsc-Chr151449 20437 22614 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151449g00001 1 579 Carbohydrate Esterase AT2G26450 47.326 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151449g00001 - - gmx:100784679 687.567