Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151448g00001 ATGGCGGCAAATGCAGCTGAAGCTTCTGAAACCAAAAAGATTAATAACTACGACGTTTTCCTGAGCTTTAGGGGTGAGGACACGCGTCACACTTTCACAGGTTATCTCTACGAAGCATTGTGCCGCAAGGGAATCAAAGCCTTCATGGACAACGAGAATCTGAGGATTGGGGTCGCAATTGGACCTAATCTTGTTAAAGCAATTGAAGATTCAAGCATTTCGATTGTTGTTTTCTCTGAGAATTATGCTGCTTCCAAGTGGTGTCTTGATGAACTCGTGAAGATCCTCGAGTGCAGGAACGAGAAGAATCAGCTCTTGGTTCCGATCTTCTACAAAGTAGAACCCTCGGATGTACGGTATCAGAGGAACAGTTATGAAAAAGCCATGGCTGCTCACGAACTTAGGTATGGTTGTGACTCTGAGAAGGTGAAGAAATGGAGGTCAGCATTGTTTGATGTATCCCAAATTTCAGGACATGTTTTGAAAGAGGGGTATGAATTCAAGTTCATTCAAGATATTGTTTGCAAGGCCAATGCTAAATTATCTTCTAAACAATTACACATTGATGAGCACATGGTTGGGCTGCAGTTTAGAGTTGAGGAGGTGAAATCACTTCTAGATATCGAGTCTACTAGCAGCACTTCCATGGTGGGGATTTATGGAATTGGTGGTATTGGCAAAACGACACTAGCGAAAGCATTGTATAACACCATCTGCAACCAGTTTGAAGGTGCTTGTTTTCTCTTTGATGTCAGCAAAACTTCAAATCAGGACAAGGGGCAAGTGCATTTGCAACAAACTCTCTTGTGTGAACTGTTGGAGGAGGGGAAAATCGAGTTTAGCAGTGTAGAAAAAGGGATCTCTATATTAAAAGACAGACTTGCCGGAAGAAGAGTTCTTGTAGTCCTTGATGATGTTGACAATGCAGAACAGTTAAGAGCATTGGCAGGAGAATGTGGTTGGTTTGGTTGTGGGAGCAGGATTATTATAACAACAAGGAATAAATATTTGCTCGTAGCTCATCGGGTCGAAAACGTTTATCAGATGAAAGTGTTAAGTGTTTATGAATCTCTTGAGCTCTTTTGTCTGAATGCATTCAAAATGAGTAGTCCTGCAACAAACTATGATCACTTATCCACTAGAGCAATACAGTATGCCCAAGGGCTTCCATTGGCTTTAAAAGTTATAGGCTCTAATTTGATTGACAAAGATTTCAATGAGTGGAACTCTGCATTGGACAAATATGAGAAGAATCCTCATAGAGATATTCAAAGCATTTTAAGAATAAGCTATGATAGCTTAGAAAGCAATGAGAAGGAAATTTTTCTTGACATTGCGTGCTTCTTCAATGGGCAGAGGTTGGAGTATGTGAAAAGAATACTTGATGGGTGTGAGTTCTACCCAGAAGATGGTATTAGAATACTTATTGATAGATCTCTCATAACCGTTGAAGATGGTCACGTGAGGATGCATGATCTAATACAGGACATGGGTAGAGATGTTGTAAAGCAGGAGGCGCCAAAAGATGCCGCTGAACGTAGTAGATTATGGTTTAGAGAAGATGTTCTTGAAGGAAGTCGTAAAATTGAAGGAATAAAGCTTGATTGCCTGGAAGAAGTTAATTTGATTTCTAGTGCCTTTGAGAAGATGAAGAAGCTTAGAATCCTCATCGTGCGGAACACAAGCTTTTCATTTGAACCTATTCATCTACCAAACCATTTAAGGCTGCTTGATTGGAAGGGTTACCCTTCAAAATCTTTCCAACCAGATTTTTATCCCAAGAAAATTGCTGCCTTAAATTTACGTTGCAGTCCTTTTGTATTGGAAAATCCATTTCAGAAATTTGAGCATTTGACCTACATGAATTTCTCCTATTGTCAATCCATCACCAGAATCCCTGATGTTTCTGGAGCCAAAAATTTAAAAGAATTGATACTTAATAAATGCAAAAAACTGGTCAAGGTTGATCAATCAGTTGGCTTTCTCCCTAACCTTGTTTACTTAAGTGCTTCGGGATGCATTCAACTAAGAAGTTTTCTGCCAAGAATCTTTTTGCCGTCTCTTGAGTTCCTTTCCTTTGACCTGTGTAGAAGACTTGCATACTTCCCGGATGTATTGGGAACGATGGATAAGCCCTTAAAAATATGTATGAAGCATACTGCTATTAGAGAGCTTCCACCTTCCTTTGACAATCTTAATGGACTTGGTTACTTGGATATGTCAAGTTGTAAGCAACTCCACAATCTACCAAGTAACCTGTTTATGTTGCCAAATTTTGTCACATTGAAAATCGGAGGGTGCCCTCAACTTCGAGAATCATTTACGCCGCTCAAAGGACATGTTTCTAGAGCCGAGTGCTGGCCAAAGTTAGAGACTTTGCATTTCTGCAATGCGAGTCTATCAGATGAAGATCTTTATGGAATTGTACATAGTTTCCCAAAGTTGAGAGAACTAAATGTGTCGTCAAACTATTTTGTATCATTCGGAGCACACATTAAGGAATCTATTAACTTGACAACTCTTGATGTGAGTTATTGCCTGAAGCTACAGCAAATTCCAGAACTGCCCTCTAGTGTTCAAAAAGTAGATGCAAGACACTGCAATTCCTTAACAACTGACACATCAAGTATGCTATGGTCACAGGTGCGCACACAGATGAATAGATTAGAAGTTGTGATGCCCAAGGCAGATATTCCAGAATGGTTTGACTATCATGGCCAAGGTGATATTCCGATTTTCTGGGCTCGTGAAAAGTTCCCTTTTGTGGCTTTGGCCTTTGTGTTTGAAGAAATAAACTATCAAGCTGTTAGTCTGCACCTGTTCATTGACAATGAGCATGTAGATGTTCAAAGCCAACATCATATTTTCAATGTAGCTGAAGATCATGTGCTGTTGTGCGACCTGCGTGTTTTATTCAGAGATGAGGAGTGGAAGAGGCTTGATGCTCGTCTCCGACATGATAATGGTTGGAAGTTCATGCAAGTGAAGTGTGAACCAGACATGATCCCGAGAGACTGGGGGGTTTATATATATAGCAAAGAAACAAACCTGGATGATATACAATTCTCATGTCCATATCCAGCTTCCTTAGGGTTGCGATCGCTTATGGTAGGTTCAAATTTAAACATGATAATGGTATCAAGAAATGAGGTGGAGGAAGGAAGTACAACAGGAACAGATTCATCAAGTCATTTGGAAGACTTGGATTCTATTGACCAAGAGAAAGAAGCATCATTTTCGGAAAGTGTCAATGCAACTGATAATTCAAGTCCTCATGCTGACTCTTGCAGCTGCTGCTACTCAGCTGCATTGTCAGCTTTCAAGAAACTTCTTGGTTTTAAGGTCAGGAGACAAATTCAAGGGCACGATGAGAGGCCTCCAACAGCATCACGTTCGTCAAAACCTTTTTTGAGGCGTTCTTCACGTTTCATGAGAAGTTCCTCATCACGTTTGATGTTTCACGATGAATTGTGTGGTCCACTAAGGAGCCTAGAGAGGCAAAAGCAAAACGTGGAAGAGACAGGGGACAGAATTTCAAGACTTTCCAGTAGGTTAGTGATGGAGGAACGTACAAGCTTTGAGTTGAATCAGAGAAATTCTGGTGAGTTGGAATACAAAATCTGTGAAGATGGTGATGATATTGATGTTAGGAACCAAGTGCCTCCTCCCTTCTCAGAGAACCTCCAAACTGTGATTGAAAACTTGAGGAGCTTTAAGGCTCCAAGACGAAAGAAAGGCATGAGCAACGGAGACCATGACAATGATGACTTGAAATGGTTGGCTGAGACAGAGATATTAAGCGATGATGAGTACGAGGAGGATGATGGAGAGTCAGATACAGAAGCATAG 3849 0.4063 MAANAAEASETKKINNYDVFLSFRGEDTRHTFTGYLYEALCRKGIKAFMDNENLRIGVAIGPNLVKAIEDSSISIVVFSENYAASKWCLDELVKILECRNEKNQLLVPIFYKVEPSDVRYQRNSYEKAMAAHELRYGCDSEKVKKWRSALFDVSQISGHVLKEGYEFKFIQDIVCKANAKLSSKQLHIDEHMVGLQFRVEEVKSLLDIESTSSTSMVGIYGIGGIGKTTLAKALYNTICNQFEGACFLFDVSKTSNQDKGQVHLQQTLLCELLEEGKIEFSSVEKGISILKDRLAGRRVLVVLDDVDNAEQLRALAGECGWFGCGSRIIITTRNKYLLVAHRVENVYQMKVLSVYESLELFCLNAFKMSSPATNYDHLSTRAIQYAQGLPLALKVIGSNLIDKDFNEWNSALDKYEKNPHRDIQSILRISYDSLESNEKEIFLDIACFFNGQRLEYVKRILDGCEFYPEDGIRILIDRSLITVEDGHVRMHDLIQDMGRDVVKQEAPKDAAERSRLWFREDVLEGSRKIEGIKLDCLEEVNLISSAFEKMKKLRILIVRNTSFSFEPIHLPNHLRLLDWKGYPSKSFQPDFYPKKIAALNLRCSPFVLENPFQKFEHLTYMNFSYCQSITRIPDVSGAKNLKELILNKCKKLVKVDQSVGFLPNLVYLSASGCIQLRSFLPRIFLPSLEFLSFDLCRRLAYFPDVLGTMDKPLKICMKHTAIRELPPSFDNLNGLGYLDMSSCKQLHNLPSNLFMLPNFVTLKIGGCPQLRESFTPLKGHVSRAECWPKLETLHFCNASLSDEDLYGIVHSFPKLRELNVSSNYFVSFGAHIKESINLTTLDVSYCLKLQQIPELPSSVQKVDARHCNSLTTDTSSMLWSQVRTQMNRLEVVMPKADIPEWFDYHGQGDIPIFWAREKFPFVALAFVFEEINYQAVSLHLFIDNEHVDVQSQHHIFNVAEDHVLLCDLRVLFRDEEWKRLDARLRHDNGWKFMQVKCEPDMIPRDWGVYIYSKETNLDDIQFSCPYPASLGLRSLMVGSNLNMIMVSRNEVEEGSTTGTDSSSHLEDLDSIDQEKEASFSESVNATDNSSPHADSCSCCYSAALSAFKKLLGFKVRRQIQGHDERPPTASRSSKPFLRRSSRFMRSSSSRLMFHDELCGPLRSLERQKQNVEETGDRISRLSSRLVMEERTSFELNQRNSGELEYKICEDGDDIDVRNQVPPPFSENLQTVIENLRSFKAPRRKKGMSNGDHDNDDLKWLAETEILSDDEYEEDDGESDTEA 1282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151448g00001 1282 Pfam TIR domain 16 177 IPR000157 GO:0007165
Stsc151448g00001 1282 MobiDBLite consensus disorder prediction 1239 1282 - -
Stsc151448g00001 1282 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 158 IPR035897 -
Stsc151448g00001 1282 SUPERFAMILY L domain-like 534 891 - -
Stsc151448g00001 1282 ProSiteProfiles TIR domain profile. 15 181 IPR000157 GO:0007165
Stsc151448g00001 1282 PRINTS Disease resistance protein signature 386 400 - -
Stsc151448g00001 1282 PRINTS Disease resistance protein signature 730 746 - -
Stsc151448g00001 1282 PRINTS Disease resistance protein signature 216 231 - -
Stsc151448g00001 1282 PRINTS Disease resistance protein signature 293 307 - -
Stsc151448g00001 1282 MobiDBLite consensus disorder prediction 1239 1265 - -
Stsc151448g00001 1282 SMART till_3 16 156 IPR000157 GO:0007165
Stsc151448g00001 1282 Pfam NB-ARC domain 198 435 IPR002182 GO:0043531
Stsc151448g00001 1282 MobiDBLite consensus disorder prediction 1266 1282 - -
Stsc151448g00001 1282 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 183 - -
Stsc151448g00001 1282 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 445 IPR027417 -
Stsc151448g00001 1282 Gene3D - 185 348 IPR027417 -
Stsc151448g00001 1282 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 751 IPR044974 GO:0006952
Stsc151448g00001 1282 Gene3D Ribonuclease Inhibitor 716 891 IPR032675 -
Stsc151448g00001 1282 Gene3D Ribonuclease Inhibitor 527 715 IPR032675 -
Stsc151448g00001 1282 Gene3D - 11 184 IPR035897 -
Stsc151448g00001 1282 MobiDBLite consensus disorder prediction 1118 1137 - -
Stsc151448g00001 1282 SUPERFAMILY "Winged helix" DNA-binding domain 422 523 IPR036390 -
Stsc151448g00001 1282 SMART AAA_5 213 353 IPR003593 GO:0016887
Stsc151448g00001 1282 Coils Coil 1161 1184 - -
Stsc151448g00001 1282 Gene3D - 352 435 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151448g00001 Stsc-Chr151448 2594 7617 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151448g00001 16 770 WRKY Transcription Factor Family AT4G12020 32.695 4.84e-98 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151448g00001 - - aip:107611979 1839.31