Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151447g00004 ATGAGGACCAATAACAGTAGTAGTAAGGGTGCTGCTTCCAATGGCTGCTTGCAAGGGTTGAAGCCGGTCATTGTTATGGTTATTGTTCATATTGCAATAGCCGCTGTCAATATCCTCTACAAGCTCGCCGTTAACGATGGCATGAGTCTTAGGGTCACTATCGCCTACCGCTGGATTTTCGCTGCTGCTTTCCTTTTTCCCTTTGCTTTCTTTTTCGAAAGGAAGAAGAGAACAAAATTGACATGGATGGTACTATTTCAATCATTTCTATGCGGCTTATTCGGAGGAGCATTATCTCAAAATTTATACCTGGAGGCTCTGGCTTTAACTACTGCAACATTTGTATCCGCCACGACCAACCTCTTGCCAGCTATTACCTTTATCATGGCCCTTTGCATACGGATGGAAAGATTGAATTTGGGATCAGCAGGAGGGCATGCGAAGATAATTGGAACAGTGATTGGACTTGGTGGGGCAATGGTGCTAACTTTCGTCAAAGGTCCAGAAATCCATACGGCATTCCACACAAACCTCCTGTTGCATCACAAAAACAATAGTAGCATAGCTAGTAATGGTGGTGGCGGTGGCAGATGGGTGTTGGGTTCTGCGTGCGCGTTGGGGTGCGGGATCTCTTATGCGTTGTGGCTGATGATACAGGCAAAGATGAGTGAGAGGTACCCAAGCTACTATTCAAGCACTGCCCTCGTATCTCTTTGGGCGGCCCTCTTGTCCACCGTGTACGCGCTTTCCCTTGAGAAGGATTGGAGTCAGTGGAGACTGGGTTGGAATATTAGGCTTCTCACGGTGGCTTATTCAGGGATCGTGGTTTCTGGAATGATGATGGCTGTGATGTCGTGGTGCGTACACGTGAGAGGGCCCTTGTTTGTCTCTGTTTTTAGCCCTCTCGTGGTCGTGATTGTAGCAATAGCTGGTTTCACCATGTTGAACGAGAATCTATACCTGGGAAGCATAATTGGAGCAATGTTGATTGTGTGTGGGCTATACTCTGTTCTCTGGGGTAAAAGCAAAGAGATGAATAAGACCAACAAGAGTCCTCATGATGATGATGATGATGATGGTGACACACTACAAGTCATTACTGTGACAAGTTCTAATGCCACGAATTATGCGGTCAGGGATAACCAAGATTCAACAGAGGATTAG 1164 0.4631 MRTNNSSSKGAASNGCLQGLKPVIVMVIVHIAIAAVNILYKLAVNDGMSLRVTIAYRWIFAAAFLFPFAFFFERKKRTKLTWMVLFQSFLCGLFGGALSQNLYLEALALTTATFVSATTNLLPAITFIMALCIRMERLNLGSAGGHAKIIGTVIGLGGAMVLTFVKGPEIHTAFHTNLLLHHKNNSSIASNGGGGGRWVLGSACALGCGISYALWLMIQAKMSERYPSYYSSTALVSLWAALLSTVYALSLEKDWSQWRLGWNIRLLTVAYSGIVVSGMMMAVMSWCVHVRGPLFVSVFSPLVVVIVAIAGFTMLNENLYLGSIIGAMLIVCGLYSVLWGKSKEMNKTNKSPHDDDDDDGDTLQVITVTSSNATNYAVRDNQDSTED 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151447g00004 387 SUPERFAMILY Multidrug resistance efflux transporter EmrE 56 164 - -
Stsc151447g00004 387 Pfam EamA-like transporter family 21 163 IPR000620 GO:0016020
Stsc151447g00004 387 Pfam EamA-like transporter family 201 338 IPR000620 GO:0016020
Stsc151447g00004 387 Coils Coil 381 387 - -
Stsc151447g00004 387 PANTHER WAT1-RELATED PROTEIN 21 350 IPR030184 GO:0016020|GO:0022857
Stsc151447g00004 387 SUPERFAMILY Multidrug resistance efflux transporter EmrE 262 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151447g00004 Stsc-Chr151447 24622 26434 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151447g00004 20 372 Nodulin-like Gene Family AT1G25270 41.972 3.20e-91 276