LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc151447g00003	ATGACCACCACCAAGCTTAATACTGCCTCCTGCAATAATGTCTTCCATGGCTTCAAGCCCGTCATGCTTATGGTTATCGTTCAGATTGCATTTGCCGGTGTCAATATCCTCTACAAGCTCGCCGTTAATGATGGCATGAGCCTTAGGGTCACTGTCGCCTACCGCTTTATTTTCGCTGCTGCTTTCATGATTCCATTTTCTCTCTTTCTCGAAAGGAAGAAGAGGCCAAAACTGACATGGATGGTACTATTTCAATCATTTCTATGCGGATTATTTGGGATAGAAAGATTGAATCTGGGATCAGCAGCAGGGCAGGCCAAGATAATTGGAACCATCACTGGAATTGCTGGAGCAATGGTGCTCACTTTCGTCAAAGGTCCTGAAATCCATACGCCAACCCACGTTAACCTTCTGCATCCCAAAAACAACACTACTATAGCAGCAGCTAGTAACGGCGGCAATGTCGGTGGCAGCGGTAATAGACGGTTGTTGGGTTCTGCGTGCGCGTTGGGGGGCGGGATCTGTTATGCACTCTGGCTGATCATCCAGACGAAGATGAGTGAGAGGTACCCAAGCTACTATTCAAGCACTGCGCTCATGTCTCTTTGGGCGGCGCTCTTGTCCACCGTGTTTGCTGTTTCCATTGAGAAGGATTGGAATCAGTGGAAACTGGGATGGAACATTAGGCTTCTCACCGTGGCTTATTCCGGGATGGTGGTTTCCGGAATGATGGTAGCTGTGATATCGTGGTGCGTGCGGATGAGAGGGCCGTTGTTTGCGTCTGTTTTCAGCCCTCTCATGCTGGTGATTATCGCCATCGCAGGCTGCACTATCTTGAACGAGCAGCTACACGTTGGGAGCATTGTTGGAGCGGTTTTGATTGTGTGTGGGTTGTACGCTGTTCTTTGGGGTAAAAGCAAAGAGATGAAGAATACGAAGAAGACGACGATGAGTGAATTACCACAATGCCCTCATCACGATGATGACACCGTTCAAGTAATTGTGACTAGGTCTAATTCTAAAGTTGAAGAAGAAGATGGTAGTAGTAATAATAGCAACAACAATGCACACCATCAGCAGGATCGTAATAATACTACTAGTAGTAGTAATAATGTGGTGGTTAGGGATAATAACCAAGATTCAACAGAGGATGATGGTAATAATAATAATAATAATAATAATAATAATAATAATAATAATAACAGTAGTAGTAGAGGAATAACAAGAGATGAAGAAGAAGGAGAAAAAGAAAATGATGATGATGATGAAGAGGGAGTTACTCCGAATGCAGAAGACATAATCCCTAGTGTAGTAATATGA	1320	0.4424	MTTTKLNTASCNNVFHGFKPVMLMVIVQIAFAGVNILYKLAVNDGMSLRVTVAYRFIFAAAFMIPFSLFLERKKRPKLTWMVLFQSFLCGLFGIERLNLGSAAGQAKIIGTITGIAGAMVLTFVKGPEIHTPTHVNLLHPKNNTTIAAASNGGNVGGSGNRRLLGSACALGGGICYALWLIIQTKMSERYPSYYSSTALMSLWAALLSTVFAVSIEKDWNQWKLGWNIRLLTVAYSGMVVSGMMVAVISWCVRMRGPLFASVFSPLMLVIIAIAGCTILNEQLHVGSIVGAVLIVCGLYAVLWGKSKEMKNTKKTTMSELPQCPHHDDDTVQVIVTRSNSKVEEEDGSSNNSNNNAHHQQDRNNTTSSSNNVVVRDNNQDSTEDDGNNNNNNNNNNNNNNNSSSRGITRDEEEGEKENDDDDEEGVTPNAEDIIPSVVI	439

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc151447g00003	439	PANTHER	WAT1-RELATED PROTEIN	19	94	IPR030184	GO:0016020\|GO:0022857
	Stsc151447g00003	439	MobiDBLite	consensus disorder prediction	413	428	-	-
	Stsc151447g00003	439	MobiDBLite	consensus disorder prediction	345	405	-	-
	Stsc151447g00003	439	MobiDBLite	consensus disorder prediction	339	439	-	-
	Stsc151447g00003	439	SUPERFAMILY	Multidrug resistance efflux transporter EmrE	209	307	-	-
	Stsc151447g00003	439	Pfam	EamA-like transporter family	164	302	IPR000620	GO:0016020

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc151447g00003	Stsc-Chr151447	16551	20176	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc151447g00003	19	316	Nodulin-like Gene Family	AT1G25270	39.645	6.71e-78	244

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc151447g00003	-		-	aip:107620100	499.59