Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151446g00004 ATGACCAACCTGATGGAGTGTCATGCACCTTCATCACCTCATGTGATACCTCTTTTGCTTCTTCTTCTCCTTCTCTTTTTCACTCCACTCACAATGGCGGAACAGCAGGGGTACCCATTGCCGAAGGTTAAAGGTGACAAGACCATCGCCATTGTTCTCCTCGTTCTCATCTTCCTCTTCTTTGCTTTAGGCCTTCTTTCTATATACACTCGCCGATGCTCCCACCGGAGGCACCGTAGCCACCTCGTCAACCCTGCCATCCTCCCCGCCACCTATGGAGGTGGCGATAGCCATGGCCTCGACATGTTGGTGGTCGAATCATTCCCAACCTTCGTCTACTCCGACGTGAAGAGCCACAAGAATGCGCCGTGTCCGCTAGAATGCGCAGTGTGCCTCAGCGAGTTCCATGACGAAGAAACGCTGCGTTTGATCCCAACTTGCTGCCACGTGTTCCACCCTAACTGCATTGAGGCCTGGCTTTCCTCCCACTCAACATGCCCTGTTTGCCGTGCGAACCTCATGCCAAAACCACGTGACACGTCATCGCCATCATCATCATCATCCCTCGTTGTAAACATTTCAAATCAACCCGACCCGGATTCAGTTATAAGTGATGACCAGAACATAACAACAATAACAGATTCAAAGTCTCACCAGGAGCAGAGAACTCTTTCTAATTTTGGTGAAGAGAATGGTTCGGTTCGGTCATTTTATCGTTTTAACTCAACCGGACATTTTACGGTTCGACCGGTGGAGAACGTGGAGCGGTTCACGTTGCGGCTACCGGAAGATATGAGAAACCAGCTCGTGAATGCTAGCAGTTCAGTTAACCGAACAGTTAGTTGCAGGGTAACATTTGAAAGGGAGAGAAGCGAGAAGGAGGGTTATAGAACAAGGAGTGCAAGAAGGACCGAACAGTTCAACGGTTTGAGCCAGATGGAGCAGCGGGGGTTCACGTGGACTCAACCTTTTATTGGCATGACCAGATTAGAAAGGTCGAACAAGGGTGAGAGTAATAATAATAAAGAAAAGGAGGATGAAAAAGACGTGGGAGAACGGTCTTGTGATCTTCTATTTCCCAAGGACTCAACAAGGAGTAGTTAG 1104 0.4891 MTNLMECHAPSSPHVIPLLLLLLLLFFTPLTMAEQQGYPLPKVKGDKTIAIVLLVLIFLFFALGLLSIYTRRCSHRRHRSHLVNPAILPATYGGGDSHGLDMLVVESFPTFVYSDVKSHKNAPCPLECAVCLSEFHDEETLRLIPTCCHVFHPNCIEAWLSSHSTCPVCRANLMPKPRDTSSPSSSSSLVVNISNQPDPDSVISDDQNITTITDSKSHQEQRTLSNFGEENGSVRSFYRFNSTGHFTVRPVENVERFTLRLPEDMRNQLVNASSSVNRTVSCRVTFERERSEKEGYRTRSARRTEQFNGLSQMEQRGFTWTQPFIGMTRLERSNKGESNNNKEKEDEKDVGERSCDLLFPKDSTRSS 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151446g00004 367 MobiDBLite consensus disorder prediction 289 313 - -
Stsc151446g00004 367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 176 IPR013083 -
Stsc151446g00004 367 ProSiteProfiles Zinc finger RING-type profile. 128 170 IPR001841 -
Stsc151446g00004 367 Pfam Ring finger domain 127 170 IPR001841 -
Stsc151446g00004 367 CDD RING-H2_EL5-like 127 170 - -
Stsc151446g00004 367 MobiDBLite consensus disorder prediction 329 367 - -
Stsc151446g00004 367 Coils Coil 327 347 - -
Stsc151446g00004 367 PANTHER RING FINGER DOMAIN-CONTAINING 48 178 - -
Stsc151446g00004 367 SMART ring_2 128 169 IPR001841 -
Stsc151446g00004 367 FunFam E3 ubiquitin-protein ligase ATL6 91 176 - -
Stsc151446g00004 367 SUPERFAMILY RING/U-box 104 177 - -
Stsc151446g00004 367 MobiDBLite consensus disorder prediction 335 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151446g00004 Stsc-Chr151446 39846 41830 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151446g00004 15 307 Rapid Response to Elicitors AT3G05200 37.421 9.08e-51 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151446g00004 K10664 - gmx:100807828 260.381