Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151446g00003 ATGGCCCAAAACGACAGTACTCTCCTCAAACGCTACTACTACGTGATCAGTTTCCTCTTCCTTCTCCTTCTTCTCATGCAGACCCCGCCACCAGCAACATCTCAGCTAATAGCTACCACAAAAAACCCACCATATCTGTCTCAATCATCACCAATAGAACCACTACCCAACGACAAGTCCATGATGGCCATCATGATCATCATCGTCTTTATGTTCCTCCTCTCAGCCTTCATCACGCTCTACTCGCGACATTGCAACCGTCGTCCAGCCCGCTTACAGGCCAGCAGGCTGAACATTGCCATGGTGACCGGCGAACTTAACGATCACCGGTCCCACGGCGACTCTGTCGGCCTCAGCCGCGAGACAATCGAAAGATTCCCCACTTTTCTATACTCAGCCGTGAAGGGCCACAAGATCGGCACGTGCGCATTGGCGTGCGCGGTGTGCATAAGTGAGTTCGAGGACGAAGAGACTCTTCGCTTTATCCCCAAATGCAGCCACGTGTTTCACCCAACCTGCATCGACGCCTGGCTGCTATCTCATTCCACGTGTCCCGTTTGCCGCGCCGACCTCGTTCCGACTCAAAACGACGTCGATTCGTCTTCTATATTCTCAATTCATATCCCTGATGATGACGTCATCAACGGAATGCAGGAGCAGCAGTGCCAAAACAACGAACAAGAGGACGCTATTGCTGATGCCGGGGGCCGGGGGAGTGATCAAAACGACGACGTAGAAGAGTCGTTTTCATCAAAGAGTGGATTGCTACTTAGAAGCCGTACGGTGAACCATGTTTTGAGCGGCCAAACCCTGCGTTCTTTATTGTTTCCTCGGTCTTACTCGGCCGGAACAGGCTTAACGACGGTTCAGACCGGTGATAATGATTTTGAAAGGTTTACTCTGAGGCTACCGAGTGAAGTTCGAAGCGAGGTTTTCATGAAGTCGAGATTGAAGCGTGCAAAGACTTGTGTGGGGTTAGTGAGAATGAATAGTGGGACAAAGGGCTATAGGACGACAGGGATTGACCATGAGGGGTTGCGGTTCGCTTTAACACCGCCATTTATGACCAAGAATTGGAATAGATTAGGCAGCAGATCTTCATCTTCTGCTCATCAGTGTTTAGGTGTTGATGAGGTGGAAAATAATAATGTGGGTGAGCGATCATCTGATCTCTTCTTCCCTCAATCAGTAGCTTAA 1197 0.4996 MAQNDSTLLKRYYYVISFLFLLLLLMQTPPPATSQLIATTKNPPYLSQSSPIEPLPNDKSMMAIMIIIVFMFLLSAFITLYSRHCNRRPARLQASRLNIAMVTGELNDHRSHGDSVGLSRETIERFPTFLYSAVKGHKIGTCALACAVCISEFEDEETLRFIPKCSHVFHPTCIDAWLLSHSTCPVCRADLVPTQNDVDSSSIFSIHIPDDDVINGMQEQQCQNNEQEDAIADAGGRGSDQNDDVEESFSSKSGLLLRSRTVNHVLSGQTLRSLLFPRSYSAGTGLTTVQTGDNDFERFTLRLPSEVRSEVFMKSRLKRAKTCVGLVRMNSGTKGYRTTGIDHEGLRFALTPPFMTKNWNRLGSRSSSSAHQCLGVDEVENNNVGERSSDLFFPQSVA 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151446g00003 398 SMART ring_2 146 187 IPR001841 -
Stsc151446g00003 398 SUPERFAMILY RING/U-box 140 199 - -
Stsc151446g00003 398 ProSiteProfiles Zinc finger RING-type profile. 146 188 IPR001841 -
Stsc151446g00003 398 Pfam Ring finger domain 145 188 IPR001841 -
Stsc151446g00003 398 CDD RING-H2_EL5-like 146 188 - -
Stsc151446g00003 398 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 30 290 - -
Stsc151446g00003 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 194 IPR013083 -
Stsc151446g00003 398 FunFam E3 ubiquitin-protein ligase ATL6 106 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151446g00003 Stsc-Chr151446 32783 34283 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151446g00003 12 370 Rapid Response to Elicitors AT3G05200 32.884 4.84e-43 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151446g00003 K10664 - gmx:100814384 244.973