Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151441g00004 ATGTCAATCTTCGATGGAGCATTCATGGACACAGAGCTCTCAAAGCGCACATCAATCTTCGGCCTCCGTCTCTGGGTCGTCATCGGAATCCTCGTCGGAGTCCTCATCGTCTTCACCCTTTTTCTCCTCTCCCTCTGCCTCACCTCTCGACGCCACCGCCGCCGCCGTACCGTCGCCGGAAAATACTCATCCGCCGGAGCACCACCCGCCAAGGAGATCCAGGAGATAGTCCACCTCCCTGGACCACACATGCTCCGGCAGCCTCAGGCGCCGGCCCCGGTGCCGGAGATCCACGTGGACTTCGGAAAGGTAGAACACCGTGTGGTGGTGCACTCCGATAACAACAACAGCAACAATAGAGGAGTGTCTAGCGGTGAAAGTAAAGGAACTGTTAGTGGGTGTGAAACGACATCGTCGTTTGGGAGTGGGAGTGTCGTTTTGGGTGGTGGAGGTGTTGGTGTGGGACCAGAGGTTTCTCATCTTGGTTGGGGAAGATGGTACACTTTGAGAGAACTTGAAGCTGCTACCAATGGATTGTGTGCAGAGAATGTGATCGGTGAAGGTGGTTATGGCATTGTTTATTCTGGTGTTCTAAGTGATGGTACCAAAGTTGCTGTCAAGAATCTCTTGAATAACAAGGGCCAAGCTGAGAGAGAATTTAAAGTAGAGGTAGAAGCAATTGGTCGAGTTCGACACAAAAATCTCGTTAGATTACTTGGTTATTGTGTTGAGGGGGCCTACAGGATGCTTGTGTATGAGTATGTGAACAATGGGAATCTAGAACAATGGCTGCATGGGGATGTTGGACCTTTAAGTCCTTTGACATGGGATATACGCATGAACATCATCTTGGGAACTGCAAGAGGATTGGCATATCTTCATGAGGGTCTTGAACCAAAGGTTGTCCACCGAGATGTGAAATCGAGTAATATACTCATTGATCGCCAATGGAACTCCAAGGTTTCTGATTTTGGGCTCGCTAAACTCTTGTGTTCCGAGAATAGCTACGTAACAACTCGAGTGATGGGAACATTTGGTTATGTCGCACCGGAGTATGCCTGCACTGGAATGTTGACCGAAAAGAGTGACGTTTATAGCTTCGGAATACTAATCATGGAGATAATTACTGGGAGAAGTCCTGTTGATTATAGTAGACCACAAGGAGAGGTCAACTTAATAGATTGGTTGAAGACTATGGTTGGGAATAGAAAAGCTGAAGAGGTGATTGATCCTAAGCTCCCTGAGATGCCATCTTCCAAGGCTCTTAAACGTGCTATACTGATTGCCCTTCGTTGTGTCGACCCTGATGCGACAAAGAGGCCTAAAATGGGACATGTGATCCACATGCTTGAGCAAGATGATCTGTTATTCCAACATGAACGCAAAACCGAGGGAGAATCTTCGCGTTCACATCAGAGTCATCGACAAGAGCGCAAGGACTCGAGTTTAGATATGAGGATACCAGATGCAGGGATCACTGATCAAAGTGAAGATGACAGTAGTAGAAATCACCAGCAGAATACTAGGTGGAGATGA 1536 0.4785 MSIFDGAFMDTELSKRTSIFGLRLWVVIGILVGVLIVFTLFLLSLCLTSRRHRRRRTVAGKYSSAGAPPAKEIQEIVHLPGPHMLRQPQAPAPVPEIHVDFGKVEHRVVVHSDNNNSNNRGVSSGESKGTVSGCETTSSFGSGSVVLGGGGVGVGPEVSHLGWGRWYTLRELEAATNGLCAENVIGEGGYGIVYSGVLSDGTKVAVKNLLNNKGQAEREFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVNNGNLEQWLHGDVGPLSPLTWDIRMNIILGTARGLAYLHEGLEPKVVHRDVKSSNILIDRQWNSKVSDFGLAKLLCSENSYVTTRVMGTFGYVAPEYACTGMLTEKSDVYSFGILIMEIITGRSPVDYSRPQGEVNLIDWLKTMVGNRKAEEVIDPKLPEMPSSKALKRAILIALRCVDPDATKRPKMGHVIHMLEQDDLLFQHERKTEGESSRSHQSHRQERKDSSLDMRIPDAGITDQSEDDSSRNHQQNTRWR 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151441g00004 511 FunFam Putative receptor-like serine/threonine-protein kinase 255 465 - -
Stsc151441g00004 511 MobiDBLite consensus disorder prediction 461 511 - -
Stsc151441g00004 511 Pfam Protein kinase domain 183 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151441g00004 511 Gene3D Phosphorylase Kinase; domain 1 163 254 - -
Stsc151441g00004 511 FunFam Probable serine/threonine-protein kinase At1g01540 159 254 - -
Stsc151441g00004 511 SUPERFAMILY Protein kinase-like (PK-like) 158 451 IPR011009 -
Stsc151441g00004 511 ProSitePatterns Serine/Threonine protein kinases active-site signature. 301 313 IPR008271 GO:0004672|GO:0006468
Stsc151441g00004 511 ProSitePatterns Protein kinases ATP-binding region signature. 185 207 IPR017441 GO:0005524
Stsc151441g00004 511 CDD STKc_IRAK 185 452 - -
Stsc151441g00004 511 ProSiteProfiles Protein kinase domain profile. 179 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151441g00004 511 PANTHER OS01G0323000 PROTEIN 8 477 - -
Stsc151441g00004 511 SMART serkin_6 179 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151441g00004 511 Gene3D Transferase(Phosphotransferase) domain 1 255 468 - -
Stsc151441g00004 511 MobiDBLite consensus disorder prediction 112 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151441g00004 Stsc-Chr151441 29877 33846 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151441g00004 166 510 Trihelix Transcription Factor Family AT5G38560 44.068 1.07e-92 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Stsc151441g00004 Pkinase 3.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151441g00004 - - gmx:100817295 705.286