Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151441g00003 ATGGCAACCACCCATTCTCTTCTTCACTCTTCCACTTCCTCTTTTCTTGCTCAATTTCGTCCCTTTCCACCTCCACTCTCTTCTTCTGTACCATTTTCTCATGCAACAAGGCATGGATTGTTTTCTGTGAAGGCTTCTGATTCTGGTGCTGCGGTGCTGGTTGACAAGTCCGAAGCAGAGACTGTTCATCGTCTCAAAACTTCTTACAAAGAGAAAATCGTTCCTTTGCTCATGGAGGAGTTCAGTTACACCAATATCCACCAGGTTCCTAAGATTGAGAAAATTACAGTTAACTGTGGTATTGGTGATGCTGCCCAAAATGCAAAGGGTTTGGAAGCAGCAATGAATGATCTAGCTCTGATCACAGGGCAGAGACCAGTTAAGACTCGGGCTAGGGCTTCAGTCGCTACCTTCAAGATCAGGGAAGGTCAACCACTTGGGATAGCTGTGACACTCAGAGGAAAGGTCATGTACAACTTCCTAGACCGAGTTATCAACTTGGGACTTCCCAGGACAAGAGATTTCCAAGGATTGAACCCTAACAGCTTTGACGGCAATGGGAACTACAGCATCGGTGTTAAGGACCAGGGTGTGTTCCCGGAGATCAAATATGATGCTGTCGGCAAGCCTAGGGGAATGGATATCTGCATCACGACAACGGCTAAAACCGATCAAGAAGCGCAAAAGTTAGGCATGCCATATGGTTATGTAGATCATGCTTGCTAA 726 0.4614 MATTHSLLHSSTSSFLAQFRPFPPPLSSSVPFSHATRHGLFSVKASDSGAAVLVDKSEAETVHRLKTSYKEKIVPLLMEEFSYTNIHQVPKIEKITVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARASVATFKIREGQPLGIAVTLRGKVMYNFLDRVINLGLPRTRDFQGLNPNSFDGNGNYSIGVKDQGVFPEIKYDAVGKPRGMDICITTTAKTDQEAQKLGMPYGYVDHAC 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151441g00003 241 Gene3D - 56 235 IPR022803 -
Stsc151441g00003 241 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 66 229 IPR002132 GO:0003735|GO:0005840|GO:0006412
Stsc151441g00003 241 Pfam ribosomal L5P family C-terminus 145 230 IPR031309 -
Stsc151441g00003 241 FunFam 50S ribosomal protein L5 60 235 - -
Stsc151441g00003 241 Hamap 50S ribosomal protein L5 [rplE]. 62 240 IPR020930 GO:0003735|GO:0005840|GO:0006412
Stsc151441g00003 241 SUPERFAMILY RL5-like 64 230 IPR022803 -
Stsc151441g00003 241 ProSitePatterns Ribosomal protein L5 signature. 118 134 IPR020929 GO:0003735|GO:0005840|GO:0006412
Stsc151441g00003 241 Pfam Ribosomal protein L5 85 141 IPR031310 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151441g00003 Stsc-Chr151441 23419 25669 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151441g00003 91 218 Cytoplasmic Ribosomal Protein Gene Family AT2G42740 28.125 8.49e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151441g00003 K02931 - gmx:100800193 346.665