Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151440g00002 ATGAGAGAGCAAATGCTAACACAAGATCATAGGAATAATAATAATAATAATAGTAGAAACAAAGGAGGAGGCTTTCTTGTTCTTCAACATTATCATCACATCAACAACAACAATGGCCTCCCTTTGATCCATTTGCTCCTCTCAACCGCCACCGCCGTAGACGCTGCCGACTTCACCGCCGCCTTGGACAACCTCATTGAGCTCTACCAGAGCGTTTCCCTAACCGGCGACTCAGTTGAGCGTGTTGTGGCGTATTTCTCTGATGGCTTAACCGCAAGGCTCCTCACAAGGAAGTCACCTTTCTATGACATGATCATGGAGGAACCAACTTGTGAGGAAGAGTTTCTTGCTTTCACTGATCTCTATAGAGTCTCTCCCTACTTCCAATTTGCACATTTCACTGCAAATCAAGCAATCTTGGAGGCCTTCGAAAGGGAAGAGGATCGAAACAACCGTTCCATTCATGTCATCGATTTCGACGTCTCTTATGGCTTCCAGTGGCCTTCTATGATACAGTCGCTATCAGAGAAGGCCACTAGTGCCAACCGTATTTCCCTAAGGGTAACAGGATTTGGGAAGAATCTAAAGGAGCTGCAAGAAACTGAGTCAAGATTAGTGAGCTTCTCAAAGGGATTTAGCAACCTTGTGTTTGAGTTCCAAGGGCTTCTGAGAGGGTCAAGGGTGATAAACCTAAGGAAGAAGAAGAACGAAACAGTGGCAGTGAACTTGGTTTCATACTTGAACACCTTGAGCTGTTTCATGAAGATCTCAGACACATTGGGGTTTGTCCATTCTCTTAACCCCTCCATTGTTGTGTTGGTTGAGCAAGAAGGTAGCAGAACCCCAACAAGGACGTTCTTGTCAAGATTCACAGACTCATTGCACTACTTCGCCGCCATGTTCGATTCTCTTGACGATTGTCTCCCATTGGAGAGCACCGAGAGGCTCAGGATCGAGAAGAAGCTTCTTGGGAAAGAGATCAAGAACATGCTCAACAACTATGAAAGCAACAATGGCGGCGGTGGTGGAGATTGTGCCAAGTATGAGAGGATGGAGACATGGAAAGCAAGAATGGAGAATCATGGTTTTGTTGGCAACAAGATAAGCTCCAAGGCCATGATTCAAGCCAAGCTTCTTTTGAAGATGAGGACTCATTATTGTCCGATGCAGTTTGAAGAAGAGGAAGACGGCGGCGGCAGCGGTGGCGGTTTCAGGGTTTCGGAGAGAGATGAAGGAAGGGCTATCTCTTTGGGGTGGCAAAATAGGTTTCTTCTTACTGTCTCAGCTTGGCAACCACTTCTCTGA 1305 0.4621 MREQMLTQDHRNNNNNNSRNKGGGFLVLQHYHHINNNNGLPLIHLLLSTATAVDAADFTAALDNLIELYQSVSLTGDSVERVVAYFSDGLTARLLTRKSPFYDMIMEEPTCEEEFLAFTDLYRVSPYFQFAHFTANQAILEAFEREEDRNNRSIHVIDFDVSYGFQWPSMIQSLSEKATSANRISLRVTGFGKNLKELQETESRLVSFSKGFSNLVFEFQGLLRGSRVINLRKKKNETVAVNLVSYLNTLSCFMKISDTLGFVHSLNPSIVVLVEQEGSRTPTRTFLSRFTDSLHYFAAMFDSLDDCLPLESTERLRIEKKLLGKEIKNMLNNYESNNGGGGGDCAKYERMETWKARMENHGFVGNKISSKAMIQAKLLLKMRTHYCPMQFEEEEDGGGSGGGFRVSERDEGRAISLGWQNRFLLTVSAWQPLL 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151440g00002 434 Pfam GRAS domain family 42 431 IPR005202 -
Stsc151440g00002 434 ProSiteProfiles GRAS family profile. 33 431 IPR005202 -
Stsc151440g00002 434 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 39 426 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151440g00002 Stsc-Chr151440 22939 24636 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151440g00002 50 432 GRAS Transcription Factor Family AT3G54220 33.929 1.54e-53 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc151440g00002 GRAS 1.7e-88 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151440g00002 - - ahf:112776716 729.939