Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151437g00003 ATGGCCATTCTTCCTCCATTAACAATTGTTCTTTCCATGCTTTTCTTCCTTAATAAAGCCTCCAATGCAACAGCTGATACTATTACACAGTCTCAGTCGCTTCAAGATGGCGAAACCTTGGTTTCAGAGGGTGGATCCTTTGAATTGGGATTCTTCACTCCCGGCAGTAGTACTAATAACTCTGCAAACCGCTACATAGGAATATGGTACAAAAATGTTCCAATCAGAACCGTTGTTTGGGTTGCCAACCGCGACAACCCAATCAACGACAACTCCTCTGTTTTGTCCATTACCAAAGACGGACAACTCCTCCTTCTCAACGGAAACAACGCAGTTCTCTGGTCAACGAACGCAACGACTACCAAAATCTCGTTTACTCCCGTGGCGCAGCTCTTGGACACCGGCAACTTGGTAGTAAGGGATGAGAAAGACAAAAATCCTGAAAATTACTTCTGGCAGAGTTTTGATTATCCATCGGACACATTCCTACCAGGGATGAAGCTCGGGTGGGACTTTCGGACCGGCCTTAACCGCCGTCTAACTGCTTGGAGAAATTGGGATGATCCGTCTCCTGGAGACTACACATCTGGCATGGAACCAAACAATAATCCGGAAACCATGACATGGAAGGGATCTAAAAAGTACTATAGAATTGGACCATTTGATGGAATCGAATTTAGCGGTTCGCCATCGTTGAAATATAATCTAATTATCAACTACACATATGTGTTTAACAAGAACGAACTGTACACTGCTTATTTCATCAATGATAAGTCAGTGATTTCGAGGATCGTGTTGAACCAAACGATTTATGCTCAGCAAAGGTGGACATGGGACAAAGACTCTGAATCATGGAGATCTTCTAACTCTTTGCCTGGGGATTACTGTGATGACTACAATCTTTGCGGAGCGTTCGGGATGTGTGTCGTTAATCAGTCCCCTGTGTGTAGATGTTTAGATGGTTTTAAGGCGAAATCGCCAGAGAGTTGGAACGTGATGGATTGGAGCCAGGGGTGCGTTCGGAGCGGGAATTGGAGTTGCAGGGAGAATGGGAAAGATGGTTTTGTGAAATTTAGTAACATGAAGGTGCCGGACACAACAAGGTCATGGTTGAATGAGAGCATGACGCTTGAGGATTGCAGGGCTAAATGCTTTGAGAATTGTTCGTGTACGGCTTTTGCGAATTCAGACATCAGAGGAGAAGGTAGTGGATGTGCCATTTGGTTTGGTGATTTGTTAGATTTGAGACAGATCCAAAATGGTGGACAAGATCTCTATGTTAGACAACCAGTTTCTCAAACAGGGACAAAACATAATAACGATGATAAAATTATAGAAGACTTTGAGGTACCCTTGCTTGACTTTGCTTTAATAGTGGAAGCAACAAATGATTTCTCAAGTAATAACAAGCTTGGTGAGGGTGGTTTTGGTCCTGTGTACAAGGGAATACTACCAGATAAACAAGAGATCGCTGTTAAGAGACTTTCACGGACATCAAACCAAGGATTAAATGAGTTTATGAATGAGGTTAAATTATGCACCAAACTTCAACACCGAAATCTTGTTAAAGTGCTGGGTTGCTCTATCCGACAAGATGAGAAATTACTCGTATATGAATACATGCCTAATAGAAGCTTAGATTTCTTTCTTTTCGATCCTACACAAGCCAAACAATTAGATTGGTCTAAACGATTGTTCATTATAAATGGAATTGCTCGAGGATTACTTTATCTTCACCAAGACTCAAGATTAAGAATCATACATCGAGATCTTAAAGCAAGCAATATTTTGTTAGACAATGAAATGAATCCAAAAATTTCAGATTTTGGCTTGGCGCGATTGTGTGGAAGCAATCAAAACGAAGGAAATACGAGCAAAGTTGTTGGTACATACGGTTACATGGCACCTGAATATGCATTTGATGGAATATTTTCTATCAAGTCAGATGTATTTAGTTTTGGAATATTATTATTAGAGATAGTAAGTGGCAAGAAAAATAGTGGAATATCTCATTTTGACAACAACAACAATCTTATTGCTCATGCATGGAGGTTATGGAAAGAGGGAAATCCGATACAATTAATAGATTCTTATATAGAAGACTCGTGCATTCTATATGAAGCCTTAAGGTGCATTCATGTAGGCCTTTTATGTGTGCAGCATCGCCCTAATGAAAGGCCTAATATGGCAACCGTTATTATGATGTTGAGTAACCAGAATCCTTTGCCTGAGCCAAAAGAACCTAATTTCTTAATTGAGAAGATCTTAATTGATGGAGAGACTTATTCAACCAAAGAAAAGTTATCTACCACTAATGAGCTTACAATTTCAATATTAAGCCCTAGATAA 2349 0.4014 MAILPPLTIVLSMLFFLNKASNATADTITQSQSLQDGETLVSEGGSFELGFFTPGSSTNNSANRYIGIWYKNVPIRTVVWVANRDNPINDNSSVLSITKDGQLLLLNGNNAVLWSTNATTTKISFTPVAQLLDTGNLVVRDEKDKNPENYFWQSFDYPSDTFLPGMKLGWDFRTGLNRRLTAWRNWDDPSPGDYTSGMEPNNNPETMTWKGSKKYYRIGPFDGIEFSGSPSLKYNLIINYTYVFNKNELYTAYFINDKSVISRIVLNQTIYAQQRWTWDKDSESWRSSNSLPGDYCDDYNLCGAFGMCVVNQSPVCRCLDGFKAKSPESWNVMDWSQGCVRSGNWSCRENGKDGFVKFSNMKVPDTTRSWLNESMTLEDCRAKCFENCSCTAFANSDIRGEGSGCAIWFGDLLDLRQIQNGGQDLYVRQPVSQTGTKHNNDDKIIEDFEVPLLDFALIVEATNDFSSNNKLGEGGFGPVYKGILPDKQEIAVKRLSRTSNQGLNEFMNEVKLCTKLQHRNLVKVLGCSIRQDEKLLVYEYMPNRSLDFFLFDPTQAKQLDWSKRLFIINGIARGLLYLHQDSRLRIIHRDLKASNILLDNEMNPKISDFGLARLCGSNQNEGNTSKVVGTYGYMAPEYAFDGIFSIKSDVFSFGILLLEIVSGKKNSGISHFDNNNNLIAHAWRLWKEGNPIQLIDSYIEDSCILYEALRCIHVGLLCVQHRPNERPNMATVIMMLSNQNPLPEPKEPNFLIEKILIDGETYSTKEKLSTTNELTISILSPR 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151437g00003 782 PIRSF SRK 1 448 IPR024171 GO:0004674
Stsc151437g00003 782 PIRSF SRK 429 782 IPR024171 GO:0004674
Stsc151437g00003 782 Gene3D Hepatocyte Growth Factor 347 428 - -
Stsc151437g00003 782 SMART serkin_6 465 743 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151437g00003 782 Gene3D - 19 155 IPR036426 -
Stsc151437g00003 782 Pfam Protein tyrosine and serine/threonine kinase 468 734 IPR001245 GO:0004672|GO:0006468
Stsc151437g00003 782 Gene3D Transferase(Phosphotransferase) domain 1 541 746 - -
Stsc151437g00003 782 Pfam S-locus glycoprotein domain 216 325 IPR000858 GO:0048544
Stsc151437g00003 782 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 21 155 - -
Stsc151437g00003 782 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 346 429 - -
Stsc151437g00003 782 ProSiteProfiles Protein kinase domain profile. 465 750 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151437g00003 782 Pfam PAN-like domain 347 415 IPR003609 -
Stsc151437g00003 782 ProSiteProfiles EGF-like domain profile. 292 328 IPR000742 -
Stsc151437g00003 782 Pfam Domain of unknown function (DUF3403) 737 782 IPR021820 GO:0004674
Stsc151437g00003 782 CDD B_lectin 31 158 IPR001480 -
Stsc151437g00003 782 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 429 540 - -
Stsc151437g00003 782 ProSitePatterns Serine/Threonine protein kinases active-site signature. 586 598 IPR008271 GO:0004672|GO:0006468
Stsc151437g00003 782 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 11 724 - -
Stsc151437g00003 782 SMART blect_4 31 158 IPR001480 -
Stsc151437g00003 782 SMART ntp_6 350 429 IPR003609 -
Stsc151437g00003 782 ProSiteProfiles Bulb-type lectin domain profile. 25 152 IPR001480 -
Stsc151437g00003 782 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 541 744 - -
Stsc151437g00003 782 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 189 IPR036426 -
Stsc151437g00003 782 Pfam D-mannose binding lectin 77 184 IPR001480 -
Stsc151437g00003 782 CDD PAN_AP_plant 346 428 - -
Stsc151437g00003 782 CDD STKc_IRAK 471 736 - -
Stsc151437g00003 782 ProSiteProfiles PAN/Apple domain profile. 347 430 IPR003609 -
Stsc151437g00003 782 Gene3D Phosphorylase Kinase; domain 1 429 540 - -
Stsc151437g00003 782 SUPERFAMILY Protein kinase-like (PK-like) 448 736 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151437g00003 Stsc-Chr151437 13934 21357 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151437g00003 439 753 Receptor kinase-like Gene Family AT4G23230 58.544 1.66e-127 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc151437g00003 PK_Tyr_Ser-Thr 3.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151437g00003 - - gmx:100786696 1082.78