Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151436g00001 ATGGCCTCTTCTTCTTCACCTCATGCAGAAGCACATGCTCTGCTGAAGTGGAAATCCACCCTTGACAACCAGAGTCAAACTCTGCTCTCTTCATGGAATGGTAATACTCCTTGCCACGATTGGATAGGAATCACATGTGATGATGAATCCAAATCTGTGTTCAAAATGAGCCTCACAAGTCTTGGACTAAATGGTACTCTTCAAAGTCTCAACTTCTCATCACTTCCCAACATACTCACTATTGATATAACCAACAACTCTTTCTTTGGAACTATTCCTTCAAAAATTGGAGTTCTTTCCAATTTGCACACACTTGAGTTCTCCACCAATCATTTCTCAGGTAGCATTCCCAAAACCATTGGTAATCTCTCAAAACTCTCTTACCTTGATCTCAGTGGCAATAGGCTGACTGGGAGAATTCCATTTGAGATAACAAAGTTGATTAGTCTTTACACTTTGGCTTTGGGAGGAAATGTTTTCAGTGGTTCCATCCCTCAAGAAATTGGCTCAATGACCAATTTGACAATACTTGATATCCCTTGGTCTAATCTCACAGGGTCTATCCCAGTTTCTATAGAGAAATTGACCAATTTGTCCCATTTTGATGTTGGTGGCAACAACCTTTCTGGCATTATTCCTCATAGAATCTGGAATATGGACCTAAATCATTTGTCCCTTGCAATCAATAACTTTTATGGTTCCATCCCTCAAGAAATTGTCAAATTGGTGAACCTGGAGATTCTATATCTCCAACAAAGTGGTCTTTCTGGTTCCATGCCCCAAGAATTTCACATGTTAAGAAATCTAATAGAGGTTGATATTAGTAGTTGCAACCTCACTGGTACTATTCCTACTTCAATAGGAGCATTGACCAATATATCACTTCTCAAATTAAGTAGTAATCAACTTCATGGCAGAATTCCTCATGAAATTGGGAATTTAGTCAACCTTAAGATTCTATTTCTTGATGGAAACAGTCTTATAGGATCTATTCCTCATGAGATTGGAAGGATGAGAAATCTCAGTCAACTTGATTTGTCTAATAACAATTTCACTGGTCAAATCCCTTCTACAGTAGGAAACTTGACCAATTTAGTTAATCTTTACCTTTACCAAAACTCTCTCTCTGGTTCTATTCCAAATGAAATTGGGAATCTTTATTCTCTTACCACAATTCAGTTGTTAGGTAACAACCTTTCAGGACCAATTCCACCATCCATAGGTAACTTGGTCAATTTGGAATCCCTTCTCCTATTTTCCAATAAACTCTCTGGAGCTATTCCTTCTACCATTGGAAACTTGACAAAACTCACTATGTTATCTTTGTTCTCAAATGATCTCAGTGGCAACATTCCAATTGAAATGAACATGGTTACCAACCTGATGCTTCTGCAATTGTCTGATAATAATTTCATAGGCCAGTTGCCTCAAAACATTTGCTTTGCTGGAAAGCTAACAAACTTTGCTGCTAGCAATAACCATTTCACAGGCTCAATCCCAAAGACCCTGAAAAATTGCTCTAGCCTTGTAAGAGTTAGGCTTGAACAAAACCGTTTGAGTGGAAATATTACTGATGATTTTGGTGTGTATCCAAATTTGGTCTACATTGAATTGAGTGACAATAATTTGTATGGCCACCTTTCACCAAACTGGGGAAAGTGTCATAACCTCACAAGCCTCAAGATCTCCAACAACAACTTGTCTGGCCGTATACCATCGGAAATCGGCAATGCGACCAACTTACATGTACTTGACTTATCTTCAAATCATCTCACAGGAGGAATTCCAAAGGACATTGGTAAATTGATCAATTTGATCCATCTCTTGATCAACAATAATCATCTTTCTGGGGATATTCCAATTGAAGTTTCATCATTAAAGGAACTCACGACCTTGGATCTTGCATCAAATAACTTAAGTGGCTTAATCCCAAAACAACTTGGAAGTTTTCTCAAGTTGTTGCAGTTGAATCTGAGCCATAACAAATTTGAGGGAAAAATCCCATCAAATCTGGGGAGATTAACATTTCTTCAAAGTCTTGACTTCAGTTGGAACTTCTTGAGTGGTACAATGCCATCAATGCTTGGAGACTTGAGTGTCTTAGAAACATTGAACATCTCACATAATAGTCTCTCTGGTGTCATTCCTTCTAGTTTTGATGATATGTTAAGCTTGACATTTATTGATATATCAAACAACCAACTAGAGGGTCCAATTCCCAGCATTCCAGCATTTCAAAAAGCTTCAACTGAAGCACTGCGAAATAACAAAGGCTTATGTGGTAATGTTTCTGGTTTGGATTCTTGTCCAACACCTATCACCATATCCCGCAGTCGTAAGACTAATAGAAGAGTTCTAGTTCTAGTTTTATCCCTTACTTTGCAAGCTCTAGTGCTAGCACTTTTGGCCTTTCTACTCGCATTTCGCCTCCGCGGAAGCATAAGTGCAGAAGAAAACCAGCCTGAAGAATCACAAACTCAAAATATGTTTGCTATATGGAGTTATGATGGGAAAATGGTGTATGACAACATTATTGAAGCCACAGAAGGATTTCATGAGAAGTATCTAATTGGTGTTGGGGGATGTGGCCTTGTTTACAAAGCTGAATTGGTGACAGGTCAAGTTGTTGCTGTGAAGAAGCTCCATTTGACACCAGATTCTTCAAGTTTAAGAGCTTTTGCAACTGAGATTCAAGTTTTGACAGAAATTCGCCATCGCAACGTTGTGAAGCTATATGGATTTTGTTCTCACACTCAATGCTCCTTTTTGGTTTATGAGTTCATTGAAAGGGGTAGCATAGATATGATCCTAGGCAATGATGAAGAAGCAGTTGAATTTGATTGGAGTAGAAGGGTGAATGCTGTTAAAGGCATAGCAAATGCTTTGTGCTACATGCATCATGGCTGCAATCCTCCTATTGTTCATCGAGACATATCAAGCAAGAATGTTCTTCTAGATTTAGAATATGAGGCTCATGTTTCGGACTTTGGAACTGCTAAGCTTCTTGATGAGAACTCATCAAATTTGACCTCATTTGCAGGCACCTTTGGATATGCTGCTCCAGAACTTGCATACACTATGGAAGTAAATGAGAAATGTGATGTTTTTAGCTTTGGGGTATTAGCATTTGAAATCCTCTTTGGAAAGCACCCAAGAGAAGCCATATTACCTATAATGTCATTATCATCTTCTTGGAGAGAAATCGCCACAAAAAGTGATAGTTTTTCACTAGAAAACATGTTGGACCATCGTCTTTCTTATCATTCTATGAGTCCAATTTCCAATGAAGTGGCTTTGATTCTAAGGGTAGCAATGGCTTGTTTGAATGAAAATCCACACTCTCGTCTTACCATGGAGCAGTTCACATTCAATTTCATTAGACTGGCTGAAGAATATGTCACTTCCATGAAGAGTGTTGTTTCTGCGCCATTGAATCGAAAAGCCTTAAAGCCTTGGTCCACCATATTAAAGTTCATAGAAGGGAAAATGAATGAGAGAGTGAGAAAGATGGAATGA 3516 0.3848 MASSSSPHAEAHALLKWKSTLDNQSQTLLSSWNGNTPCHDWIGITCDDESKSVFKMSLTSLGLNGTLQSLNFSSLPNILTIDITNNSFFGTIPSKIGVLSNLHTLEFSTNHFSGSIPKTIGNLSKLSYLDLSGNRLTGRIPFEITKLISLYTLALGGNVFSGSIPQEIGSMTNLTILDIPWSNLTGSIPVSIEKLTNLSHFDVGGNNLSGIIPHRIWNMDLNHLSLAINNFYGSIPQEIVKLVNLEILYLQQSGLSGSMPQEFHMLRNLIEVDISSCNLTGTIPTSIGALTNISLLKLSSNQLHGRIPHEIGNLVNLKILFLDGNSLIGSIPHEIGRMRNLSQLDLSNNNFTGQIPSTVGNLTNLVNLYLYQNSLSGSIPNEIGNLYSLTTIQLLGNNLSGPIPPSIGNLVNLESLLLFSNKLSGAIPSTIGNLTKLTMLSLFSNDLSGNIPIEMNMVTNLMLLQLSDNNFIGQLPQNICFAGKLTNFAASNNHFTGSIPKTLKNCSSLVRVRLEQNRLSGNITDDFGVYPNLVYIELSDNNLYGHLSPNWGKCHNLTSLKISNNNLSGRIPSEIGNATNLHVLDLSSNHLTGGIPKDIGKLINLIHLLINNNHLSGDIPIEVSSLKELTTLDLASNNLSGLIPKQLGSFLKLLQLNLSHNKFEGKIPSNLGRLTFLQSLDFSWNFLSGTMPSMLGDLSVLETLNISHNSLSGVIPSSFDDMLSLTFIDISNNQLEGPIPSIPAFQKASTEALRNNKGLCGNVSGLDSCPTPITISRSRKTNRRVLVLVLSLTLQALVLALLAFLLAFRLRGSISAEENQPEESQTQNMFAIWSYDGKMVYDNIIEATEGFHEKYLIGVGGCGLVYKAELVTGQVVAVKKLHLTPDSSSLRAFATEIQVLTEIRHRNVVKLYGFCSHTQCSFLVYEFIERGSIDMILGNDEEAVEFDWSRRVNAVKGIANALCYMHHGCNPPIVHRDISSKNVLLDLEYEAHVSDFGTAKLLDENSSNLTSFAGTFGYAAPELAYTMEVNEKCDVFSFGVLAFEILFGKHPREAILPIMSLSSSWREIATKSDSFSLENMLDHRLSYHSMSPISNEVALILRVAMACLNENPHSRLTMEQFTFNFIRLAEEYVTSMKSVVSAPLNRKALKPWSTILKFIEGKMNERVRKME 1171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151436g00001 1171 FunFam MDIS1-interacting receptor like kinase 2 isoform A 356 445 - -
Stsc151436g00001 1171 FunFam Nuclear pore complex protein NUP107 7 160 - -
Stsc151436g00001 1171 Pfam Leucine rich repeat N-terminal domain 9 47 IPR013210 -
Stsc151436g00001 1171 Gene3D Ribonuclease Inhibitor 261 353 IPR032675 -
Stsc151436g00001 1171 FunFam Leucine-rich repeat receptor protein kinase EMS1 164 260 - -
Stsc151436g00001 1171 ProSiteProfiles Protein kinase domain profile. 851 1133 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151436g00001 1171 Gene3D Ribonuclease Inhibitor 165 260 IPR032675 -
Stsc151436g00001 1171 Gene3D Ribonuclease Inhibitor 7 164 IPR032675 -
Stsc151436g00001 1171 PRINTS Leucine-rich repeat signature 698 711 - -
Stsc151436g00001 1171 PRINTS Leucine-rich repeat signature 629 642 - -
Stsc151436g00001 1171 FunFam Leucine-rich repeat receptor protein kinase MSP1 814 927 - -
Stsc151436g00001 1171 Pfam Leucine rich repeat 677 735 IPR001611 GO:0005515
Stsc151436g00001 1171 Gene3D Ribonuclease Inhibitor 354 456 IPR032675 -
Stsc151436g00001 1171 Gene3D Phosphorylase Kinase; domain 1 812 927 - -
Stsc151436g00001 1171 SUPERFAMILY L domain-like 32 327 - -
Stsc151436g00001 1171 Pfam Leucine Rich Repeat 580 602 IPR001611 GO:0005515
Stsc151436g00001 1171 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 458 772 - -
Stsc151436g00001 1171 ProSitePatterns Tyrosine protein kinases specific active-site signature. 973 985 IPR008266 GO:0004672|GO:0006468
Stsc151436g00001 1171 PANTHER LEUCINE RICH REPEAT KINASE 2 404 1129 - -
Stsc151436g00001 1171 SUPERFAMILY L domain-like 236 522 - -
Stsc151436g00001 1171 FunFam MDIS1-interacting receptor like kinase 2 928 1130 - -
Stsc151436g00001 1171 SUPERFAMILY RNI-like 427 738 - -
Stsc151436g00001 1171 SMART LRR_sd22_2 195 221 - -
Stsc151436g00001 1171 SMART LRR_sd22_2 626 647 - -
Stsc151436g00001 1171 SMART LRR_sd22_2 314 343 - -
Stsc151436g00001 1171 SMART LRR_sd22_2 410 436 - -
Stsc151436g00001 1171 SMART LRR_sd22_2 674 700 - -
Stsc151436g00001 1171 SMART LRR_sd22_2 362 388 - -
Stsc151436g00001 1171 SMART LRR_sd22_2 123 152 - -
Stsc151436g00001 1171 Gene3D Transferase(Phosphotransferase) domain 1 928 1141 - -
Stsc151436g00001 1171 SMART LRR_typ_2 698 721 IPR003591 -
Stsc151436g00001 1171 SMART LRR_typ_2 195 219 IPR003591 -
Stsc151436g00001 1171 SMART LRR_typ_2 362 386 IPR003591 -
Stsc151436g00001 1171 SMART LRR_typ_2 410 434 IPR003591 -
Stsc151436g00001 1171 SMART LRR_typ_2 674 697 IPR003591 -
Stsc151436g00001 1171 SMART LRR_typ_2 626 649 IPR003591 -
Stsc151436g00001 1171 SMART LRR_typ_2 123 147 IPR003591 -
Stsc151436g00001 1171 SMART LRR_typ_2 579 602 IPR003591 -
Stsc151436g00001 1171 SMART LRR_typ_2 242 265 IPR003591 -
Stsc151436g00001 1171 SMART LRR_typ_2 314 338 IPR003591 -
Stsc151436g00001 1171 SMART LRR_typ_2 458 482 IPR003591 -
Stsc151436g00001 1171 FunFam Leucine-rich receptor-like protein kinase family protein 261 355 - -
Stsc151436g00001 1171 Gene3D Ribonuclease Inhibitor 457 771 IPR032675 -
Stsc151436g00001 1171 SUPERFAMILY Protein kinase-like (PK-like) 829 1121 IPR011009 -
Stsc151436g00001 1171 Pfam Protein kinase domain 851 1121 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151436g00001 Stsc-Chr151436 20469 27455 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151436g00001 10 598 Receptor kinase-like Gene Family AT4G08850 36.731 2.09e-98 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc151436g00001 Pkinase 3.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151436g00001 - - gmx:100808316 1256.89