Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151435g00004 ATGGAACATTTTCACTATCTCATCACACTTGTGTCCTTGTCCTTATTGTTTTCCTCTCTAGCTTATGCCTATACTTCAAATGATGTTAAACAATGGTGTAGCCAAACACCAAACCCTCAACCATGTGAGTATTTCTTGAGCAACAACCCTAATCACCAAACCAAACCTATTAACCAAAAAAGTGATTTTCTCAAAATCTCATTGCAACTTGCTCAAGAGAGAGCAGTGATAGGGCATGCTAACACTCTTTCACTTGACTCAAAGTGCCGCAACCAACTTGAAAGAGTTGCATGGAATGATTGTGTTGAGCTCTATCAACAAACCATTCATAAGCTCAACAAAACCTTAGACCCTAACACCAAGTGCTCCCAAGTTGATACCCAAACATGGCTTAGCACTGCTCTCACCAATCTTGAGACTTGCAAAGCTGGCTTCTATGAACTTGGTGTTCAAGATTATCTTCTTCCTCTAATGTCCAACAATGTTACTAAGTTGCTAAGCAACACTTTAGCTCTTAATAACAATGGTGAATCTCATCAACAACCAAGCTACAAAAATGGATTCCCAACATGGGTAAAGCCAGGTGACAGAAAATTGTTGCAAGCATCATCTCCAGCTTCTCAAGCAAATGTAATAGTGTCCAAAGATGGAACCGGAAAATACACAACAGTTGCAGCAGCTATAAACGCAGCACCAAAAAGTAGCAGTGGAAGGTATGTTATATATGTGAAGGCTGGGATTTACAATGAACAAGTTCAGATAAAGGCAAATAATATAATGTTGATTGGAGATGGAATTGGAAAAACTATAATCACCGGCAGCCAAAGCGTGGGAAGAGGCACCACAACCTTCCGTTCAGCTACTGTTGCTGTAACTGGAGATGGATTCATTGCTCAAGGAATCACATTTAGAAACACTGCAGGTGCTGCAAATCACCAAGCTGTTGCATTGCGTTCTGGATCTGACTTATCAGTTTTCTATCAATGTAGTTTTGAAGGATATCAAGACACACTATATGTTTATTCTGACAGACAATTCTATAAAGAATGCGATATATATGGAACAGTTGACTTTATCTTTGGTAACGCTGCTGTGGTGTTCCAAAATTGCAATCTATATGCAAGAAACCCTCCAAACAAAATCAACACCATCACCGCACAAGGAAGAACTGATCCAAACCAAAACACAGGAATTTCGATTCACAATTGTGTGGTTACAGCTGCATCAGATTTAAAAGCAGTGCAAAGTTCGGTTAAAACTTACCTTGGAAGGCCATGGCAACAATATTCAAGGACAGTATTCATGAAGAGTTCTCTTGATAGCTTGATTGATCCAGCAGGTTGGTTGGAATGGAGTGGAAACTTTGCATTAAACACATTGTATTATGGAGAGTACATGAACACAGGACTTGGATCTTCAACTGCAAACAGAGTTAAATGGGGAGGTTATCATGTGATTACAAATGCTGCTGAAGCTTCAAAATTCAGTGTTGCAAATTTCATTGCCGGCAACTCATGGCTACCATCCACACGTGTGCCTTTCACAGCTGGTCTTTAA 1557 0.3982 MEHFHYLITLVSLSLLFSSLAYAYTSNDVKQWCSQTPNPQPCEYFLSNNPNHQTKPINQKSDFLKISLQLAQERAVIGHANTLSLDSKCRNQLERVAWNDCVELYQQTIHKLNKTLDPNTKCSQVDTQTWLSTALTNLETCKAGFYELGVQDYLLPLMSNNVTKLLSNTLALNNNGESHQQPSYKNGFPTWVKPGDRKLLQASSPASQANVIVSKDGTGKYTTVAAAINAAPKSSSGRYVIYVKAGIYNEQVQIKANNIMLIGDGIGKTIITGSQSVGRGTTTFRSATVAVTGDGFIAQGITFRNTAGAANHQAVALRSGSDLSVFYQCSFEGYQDTLYVYSDRQFYKECDIYGTVDFIFGNAAVVFQNCNLYARNPPNKINTITAQGRTDPNQNTGISIHNCVVTAASDLKAVQSSVKTYLGRPWQQYSRTVFMKSSLDSLIDPAGWLEWSGNFALNTLYYGEYMNTGLGSSTANRVKWGGYHVITNAAEASKFSVANFIAGNSWLPSTRVPFTAGL 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151435g00004 518 ProSitePatterns Pectinesterase signature 1. 235 254 IPR018040 -
Stsc151435g00004 518 SMART complete 243 421 IPR006633 -
Stsc151435g00004 518 SUPERFAMILY Pectin lyase-like 204 517 IPR011050 -
Stsc151435g00004 518 CDD PMEI-like_3 32 175 - -
Stsc151435g00004 518 Pfam Plant invertase/pectin methylesterase inhibitor 28 172 IPR006501 GO:0004857
Stsc151435g00004 518 FunFam Pectinesterase 204 518 - -
Stsc151435g00004 518 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 175 IPR035513 -
Stsc151435g00004 518 SMART PMEI_2 24 172 IPR006501 GO:0004857
Stsc151435g00004 518 ProSitePatterns Pectinesterase signature 2. 352 361 IPR033131 -
Stsc151435g00004 518 Pfam Pectinesterase 210 504 IPR000070 GO:0030599|GO:0042545
Stsc151435g00004 518 Gene3D Invertase/pectin methylesterase inhibitor family protein 23 175 IPR035513 -
Stsc151435g00004 518 Gene3D - 205 518 IPR012334 -
Stsc151435g00004 518 FunFam Pectinesterase 24 175 - -
Stsc151435g00004 518 NCBIfam pectinesterase inhibitor domain 4 175 IPR006501 GO:0004857
Stsc151435g00004 518 PANTHER PECTINESTERASE 18 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151435g00004 Stsc-Chr151435 16153 17812 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151435g00004 1 518 Carbohydrate Esterase AT2G45220 64.865 0.0 715
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151435g00004 K01051 - gmx:100783964 852.432