Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151429g00008 ATGGGAATATGCATGTTGGCCCAGGAACAAGGAACTCTGGCTCTCTGGCTATGTGTGGAGCAAATAAGCTACAAGATAGGTCACAATTATCATACTCATGATCAGCATCTATCCCACAATGTTTTTAGGAGAGAGCGATCAAAGAGCTACGGGGATGCTGGGGAGGTAGCAATGTTTTTGGACAACTTACCCAGCTCGACCACATTGGCATTGATGTGGAAGATATTTGGACGAGAAGGAAAAGTGGTGGATGTGTTCTTATCGAGGAAGAGAAGAACATCTAACAATCTGAAATTTGGATTTGTTAGATTCATATGTCAAGCAGAGGCAGTTTGCGCCATAGAAAGGCTGGATGGATGGATCGTGTGGGGATGCAAGATCAGTGTTGCAATAGCAAAGTATGGAAGAATGAGAAAGTGGATGCGGGAAACAGAGTAA 438 0.4384 MGICMLAQEQGTLALWLCVEQISYKIGHNYHTHDQHLSHNVFRRERSKSYGDAGEVAMFLDNLPSSTTLALMWKIFGREGKVVDVFLSRKRRTSNNLKFGFVRFICQAEAVCAIERLDGWIVWGCKISVAIAKYGRMRKWMRETE 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151429g00008 145 Gene3D - 25 144 IPR012677 -
Stsc151429g00008 145 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 56 134 IPR000504 GO:0003723
Stsc151429g00008 145 SMART rrm1_1 57 130 IPR000504 GO:0003723
Stsc151429g00008 145 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 55 134 - -
Stsc151429g00008 145 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 59 127 IPR000504 GO:0003723
Stsc151429g00008 145 SUPERFAMILY RNA-binding domain, RBD 50 141 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151429g00008 Stsc-Chr151429 32276 33201 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151429g00008 37 119 Eukaryotic Initiation Factors Gene Family AT1G71770 31.034 1.57e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151429g00008 K12891 - gab:108481700 69.3218