Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151427g00004 ATGGCAGGGGTACCAACGACGCTGGAGGAAGTTCGAACACTATGGATTGGGGACCTTCAATACTGGGTCGACGAATCATACCTCACACAGTGCTTCGCCCACACCGGCGAAGTTGTTTCCATCAAGATCATCCGCAACAAGCTCACCGGCCACCCCGAGGGTTACGGCTTTGTTGAGTTCCTCTCCCACGCCGCCGCCGAGCGCGTCCTCCACTCCTATAACGGCACTCCCATGCCGGGCACTGACCACAACTTCCGCCTCAATTGGGCCTCCTTCGGCGTCGGCGACCGCAGGCCCGACGCCGGCCCCGACCACTCCATCTTCGTCGGCGACCTCGCCCCTGACGTCACCGATTACCTCCTCCAGGAGACTTTCCGCGCGAATTATCCTTCCGTTAGAGGCGCCAAGGTGGTTACGGACCCTAACACGGGTCGATCCAAGGGGTACGGGTTCGTTAAATTCGCCGATGAGAACGAGAGGAACCGTGCAATGACGGAGATGAATGGAGTGTATTGCTCCACCAGGCCCATGCGTATTAGCGCTGCTACACCCAAGAAAACCACCGCCTTTCAACAGCAGTATGCTCCAGCTAAAGCAATGTATCCCGTCCCGGCGTATACTGCTGCTCCAGTTCCACCGGAATATGATATGAATAATACCACTGTTTATGTTGGTAATTTGGATCTTAATGTCACAGAGGAGGAGCTGAAGCAAGCCTTTATGCAATTTGGGGATATTGTGTCTGTCAAAGTTCATGCTGGCAAAGGATTTGGATTTGTTCAATTTGGGACAAGAGCTTCTGCTGAAGAAGCCATTCAGAAGTTGCAGGGGAAGGTGTTAGGTCAACAAGCGGTTCAACTTTCTTGGGCTAGTACAGCCAGACAGGATCCTGGTAGCTGGGGCCAACAGATGGATCCAAATCAATGGAGTGCCTACTATGGGTACGGACAGGGTTATGAAGCCTATGCTTATGGAGCCACTCAAGATCCTTCATTGTATGCATACGGTGCGTATGCTGGTTATGCACAATACCCCCAACAGGTTGAAGGGGCTCAAGACATGTCAGCTATGACTGTTCCTTCGGAGGAGTTGTATGATCCTCTTGCAGTGCCTGATGTTGATAAGTTAAATGCTGCATATCTCTCAGTACATGGAAATGCCATTTTAGGACGTCACCTGTGGCAAAAAACCTCGCCATTCGTACAACAAGCTTAG 1215 0.5202 MAGVPTTLEEVRTLWIGDLQYWVDESYLTQCFAHTGEVVSIKIIRNKLTGHPEGYGFVEFLSHAAAERVLHSYNGTPMPGTDHNFRLNWASFGVGDRRPDAGPDHSIFVGDLAPDVTDYLLQETFRANYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMTEMNGVYCSTRPMRISAATPKKTTAFQQQYAPAKAMYPVPAYTAAPVPPEYDMNNTTVYVGNLDLNVTEEELKQAFMQFGDIVSVKVHAGKGFGFVQFGTRASAEEAIQKLQGKVLGQQAVQLSWASTARQDPGSWGQQMDPNQWSAYYGYGQGYEAYAYGATQDPSLYAYGAYAGYAQYPQQVEGAQDMSAMTVPSEELYDPLAVPDVDKLNAAYLSVHGNAILGRHLWQKTSPFVQQA 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151427g00004 404 FunFam Polyadenylate-binding protein RBP47B 93 195 - -
Stsc151427g00004 404 Gene3D - 208 297 IPR012677 -
Stsc151427g00004 404 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 184 IPR000504 GO:0003723
Stsc151427g00004 404 SUPERFAMILY RNA-binding domain, RBD 200 318 IPR035979 GO:0003676
Stsc151427g00004 404 CDD RRM2_SECp43_like 104 183 - -
Stsc151427g00004 404 FunFam Polyadenylate-binding protein RBP47B 11 91 - -
Stsc151427g00004 404 Gene3D - 94 198 IPR012677 -
Stsc151427g00004 404 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 220 292 IPR000504 GO:0003723
Stsc151427g00004 404 SMART rrm1_1 106 180 IPR000504 GO:0003723
Stsc151427g00004 404 SMART rrm1_1 13 88 IPR000504 GO:0003723
Stsc151427g00004 404 SMART rrm1_1 221 288 IPR000504 GO:0003723
Stsc151427g00004 404 SUPERFAMILY RNA-binding domain, RBD 7 80 IPR035979 GO:0003676
Stsc151427g00004 404 Gene3D - 11 91 IPR012677 -
Stsc151427g00004 404 CDD RRM1_SECp43_like 13 93 - -
Stsc151427g00004 404 SUPERFAMILY RNA-binding domain, RBD 89 192 IPR035979 GO:0003676
Stsc151427g00004 404 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 222 285 IPR000504 GO:0003723
Stsc151427g00004 404 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 80 IPR000504 GO:0003723
Stsc151427g00004 404 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 172 IPR000504 GO:0003723
Stsc151427g00004 404 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 92 IPR000504 GO:0003723
Stsc151427g00004 404 FunFam polyadenylate-binding protein RBP45 205 298 - -
Stsc151427g00004 404 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 7 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151427g00004 Stsc-Chr151427 22252 25697 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151427g00004 13 290 Eukaryotic Initiation Factors Gene Family AT4G34110 27.148 1.07e-22 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151427g00004 - - gmx:100794427 636.721