Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc151427g00004 | ATGGCAGGGGTACCAACGACGCTGGAGGAAGTTCGAACACTATGGATTGGGGACCTTCAATACTGGGTCGACGAATCATACCTCACACAGTGCTTCGCCCACACCGGCGAAGTTGTTTCCATCAAGATCATCCGCAACAAGCTCACCGGCCACCCCGAGGGTTACGGCTTTGTTGAGTTCCTCTCCCACGCCGCCGCCGAGCGCGTCCTCCACTCCTATAACGGCACTCCCATGCCGGGCACTGACCACAACTTCCGCCTCAATTGGGCCTCCTTCGGCGTCGGCGACCGCAGGCCCGACGCCGGCCCCGACCACTCCATCTTCGTCGGCGACCTCGCCCCTGACGTCACCGATTACCTCCTCCAGGAGACTTTCCGCGCGAATTATCCTTCCGTTAGAGGCGCCAAGGTGGTTACGGACCCTAACACGGGTCGATCCAAGGGGTACGGGTTCGTTAAATTCGCCGATGAGAACGAGAGGAACCGTGCAATGACGGAGATGAATGGAGTGTATTGCTCCACCAGGCCCATGCGTATTAGCGCTGCTACACCCAAGAAAACCACCGCCTTTCAACAGCAGTATGCTCCAGCTAAAGCAATGTATCCCGTCCCGGCGTATACTGCTGCTCCAGTTCCACCGGAATATGATATGAATAATACCACTGTTTATGTTGGTAATTTGGATCTTAATGTCACAGAGGAGGAGCTGAAGCAAGCCTTTATGCAATTTGGGGATATTGTGTCTGTCAAAGTTCATGCTGGCAAAGGATTTGGATTTGTTCAATTTGGGACAAGAGCTTCTGCTGAAGAAGCCATTCAGAAGTTGCAGGGGAAGGTGTTAGGTCAACAAGCGGTTCAACTTTCTTGGGCTAGTACAGCCAGACAGGATCCTGGTAGCTGGGGCCAACAGATGGATCCAAATCAATGGAGTGCCTACTATGGGTACGGACAGGGTTATGAAGCCTATGCTTATGGAGCCACTCAAGATCCTTCATTGTATGCATACGGTGCGTATGCTGGTTATGCACAATACCCCCAACAGGTTGAAGGGGCTCAAGACATGTCAGCTATGACTGTTCCTTCGGAGGAGTTGTATGATCCTCTTGCAGTGCCTGATGTTGATAAGTTAAATGCTGCATATCTCTCAGTACATGGAAATGCCATTTTAGGACGTCACCTGTGGCAAAAAACCTCGCCATTCGTACAACAAGCTTAG | 1215 | 0.5202 | MAGVPTTLEEVRTLWIGDLQYWVDESYLTQCFAHTGEVVSIKIIRNKLTGHPEGYGFVEFLSHAAAERVLHSYNGTPMPGTDHNFRLNWASFGVGDRRPDAGPDHSIFVGDLAPDVTDYLLQETFRANYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMTEMNGVYCSTRPMRISAATPKKTTAFQQQYAPAKAMYPVPAYTAAPVPPEYDMNNTTVYVGNLDLNVTEEELKQAFMQFGDIVSVKVHAGKGFGFVQFGTRASAEEAIQKLQGKVLGQQAVQLSWASTARQDPGSWGQQMDPNQWSAYYGYGQGYEAYAYGATQDPSLYAYGAYAGYAQYPQQVEGAQDMSAMTVPSEELYDPLAVPDVDKLNAAYLSVHGNAILGRHLWQKTSPFVQQA | 404 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc151427g00004 | 404 | FunFam | Polyadenylate-binding protein RBP47B | 93 | 195 | - | - | |
Stsc151427g00004 | 404 | Gene3D | - | 208 | 297 | IPR012677 | - | |
Stsc151427g00004 | 404 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 105 | 184 | IPR000504 | GO:0003723 | |
Stsc151427g00004 | 404 | SUPERFAMILY | RNA-binding domain, RBD | 200 | 318 | IPR035979 | GO:0003676 | |
Stsc151427g00004 | 404 | CDD | RRM2_SECp43_like | 104 | 183 | - | - | |
Stsc151427g00004 | 404 | FunFam | Polyadenylate-binding protein RBP47B | 11 | 91 | - | - | |
Stsc151427g00004 | 404 | Gene3D | - | 94 | 198 | IPR012677 | - | |
Stsc151427g00004 | 404 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 220 | 292 | IPR000504 | GO:0003723 | |
Stsc151427g00004 | 404 | SMART | rrm1_1 | 106 | 180 | IPR000504 | GO:0003723 | |
Stsc151427g00004 | 404 | SMART | rrm1_1 | 13 | 88 | IPR000504 | GO:0003723 | |
Stsc151427g00004 | 404 | SMART | rrm1_1 | 221 | 288 | IPR000504 | GO:0003723 | |
Stsc151427g00004 | 404 | SUPERFAMILY | RNA-binding domain, RBD | 7 | 80 | IPR035979 | GO:0003676 | |
Stsc151427g00004 | 404 | Gene3D | - | 11 | 91 | IPR012677 | - | |
Stsc151427g00004 | 404 | CDD | RRM1_SECp43_like | 13 | 93 | - | - | |
Stsc151427g00004 | 404 | SUPERFAMILY | RNA-binding domain, RBD | 89 | 192 | IPR035979 | GO:0003676 | |
Stsc151427g00004 | 404 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 222 | 285 | IPR000504 | GO:0003723 | |
Stsc151427g00004 | 404 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 14 | 80 | IPR000504 | GO:0003723 | |
Stsc151427g00004 | 404 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 107 | 172 | IPR000504 | GO:0003723 | |
Stsc151427g00004 | 404 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 12 | 92 | IPR000504 | GO:0003723 | |
Stsc151427g00004 | 404 | FunFam | polyadenylate-binding protein RBP45 | 205 | 298 | - | - | |
Stsc151427g00004 | 404 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 7 | 295 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc151427g00004 | Stsc-Chr151427 | 22252 | 25697 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc151427g00004 | 13 | 290 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 27.148 | 1.07e-22 | 98.6 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc151427g00004 | - | - | gmx:100794427 | 636.721 |