Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151426g00001 ATGGCACCAAGCTTTGATTGCGTTTCAAGCCTTCTCTGTGCAGAGGACACAAGCTTTTTCGATGATAATCATTGTGTTGGTGCCATGGATGATGAAGTGTTTGATGAGGATTCATGGCGCCCTAGGTGTTATAATAACAATAACAAAGGTAGGAACTTTGATGGTGATGAGGCAGATGGGTATCCATTGCAGAGTGATGAGTGTGTGGCAGTGATGGTGGAAAAGGAGTGTCAACACTGGCATGGTGGTGCCTCTTACTTGAACAGGTTACAAACTGGTGATTTGGATTTTGGGGCCAGAAATGAGGCCATTCATTGGATTGAAAAGGTTCGAGCACATTTTGGTTTTGGACCTCTCACTGAATATCTGTCTATAAACTACTTTGATCGATTCCTTTCATCATATGAATTGCCAAAGGGAAGAGCTTGGACATTGCAATTGTTGGCAGTGGCCTGTTTATCAATTGCAGCAAAAATGGATGAGACTGAAGTTCCTTTCACCCTTGATTTGCAGGTTGGTGAATCAAGGTTTGTATTCGAAGCGAAAACCATTCAGAGAATGGAGCTTCTAGTATTAAGCACATTGAGGTGGAGAATGAAAGCAATTACTCCATTCTCCTTCATTGATTATTTCCTTTCCAAGATCAATGATGATAATCAGAGTCCATCATTAAGATCTTCGATTTCGCGATCCATCCAGCTTATCTTGAGCACTGCAAGAGGGATTGAGTTCTTGGAGTTCAAGCCATCCGAGATTGCGGCAGCAGTGGCAATATCTGTTATCGGGGAAACCGAAACCGAAACAGTCGACACTGAGAAAGCTACTTCTGTTCTGATTCAACACATAGAAAAGGAGAGAGTGGTTAAGTGTGTTGAATTGATCAAGGAACTTTCATTGAGCATTGTGAATGTGAATAATCCAAGTGGTGGTTTATCTTCAGTCCCTTGTGGTGTGCCTCAAAGTCCAATAGGAGTGTTAGATGCATTGTGCTTCAGCTACAAAAGTGATGACTCAAATGCAGGTTCATGTGCAAGTTCATCACATACAACTCCAGATCCTAAGAGGAGGAAGCTAAACAAAACTTGTGGATCAGAGGCACAATTGTAG 1107 0.421 MAPSFDCVSSLLCAEDTSFFDDNHCVGAMDDEVFDEDSWRPRCYNNNNKGRNFDGDEADGYPLQSDECVAVMVEKECQHWHGGASYLNRLQTGDLDFGARNEAIHWIEKVRAHFGFGPLTEYLSINYFDRFLSSYELPKGRAWTLQLLAVACLSIAAKMDETEVPFTLDLQVGESRFVFEAKTIQRMELLVLSTLRWRMKAITPFSFIDYFLSKINDDNQSPSLRSSISRSIQLILSTARGIEFLEFKPSEIAAAVAISVIGETETETVDTEKATSVLIQHIEKERVVKCVELIKELSLSIVNVNNPSGGLSSVPCGVPQSPIGVLDALCFSYKSDDSNAGSCASSSHTTPDPKRRKLNKTCGSEAQL 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151426g00001 368 Gene3D - 83 200 - -
Stsc151426g00001 368 Pfam Cyclin, N-terminal domain 70 199 IPR006671 -
Stsc151426g00001 368 CDD CYCLIN_AtCycD-like_rpt2 202 294 - -
Stsc151426g00001 368 SUPERFAMILY Cyclin-like 63 199 IPR036915 -
Stsc151426g00001 368 Pfam Cyclin, C-terminal domain 202 300 IPR004367 -
Stsc151426g00001 368 Gene3D - 201 293 - -
Stsc151426g00001 368 CDD CYCLIN_AtCycD-like_rpt1 99 197 - -
Stsc151426g00001 368 MobiDBLite consensus disorder prediction 340 368 - -
Stsc151426g00001 368 FunFam D2/4-type cyclin 83 196 - -
Stsc151426g00001 368 SMART Cyclin_C_2 202 332 IPR004367 -
Stsc151426g00001 368 SMART cyclin_7 105 193 IPR013763 -
Stsc151426g00001 368 FunFam D6-type cyclin 197 292 - -
Stsc151426g00001 368 PANTHER CYCLINS 66 296 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151426g00001 Stsc-Chr151426 13789 17072 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151426g00001 83 344 Core Cell Cycle Gene Families AT2G22490 52.830 3.24e-81 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151426g00001 K18810 - qsa:O6P43_015367 451.055