Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151425g00012 ATGGCAGGTTTGTTCTCACTAGGAGGTAGTAGTAGTACTAATAGAGGAGGGAGAGGGAGCACAAACCAACAACAACAAGACCAACAACAACACCCGGAAATTCCTCCCTCCGACACCTATTACTGGTACAAGAATGAAGACGTTTCCTCGTACCGAGGTTTCGAGCTCTGGAACCAACACCACCAACATCATCATCAACCGCCGGAACATGACCTCATACCTCAAGCAAGGCCACTCTTCCACCAGGATCTTTACAGCTCCGCGGCTGCTCTAGGCGTCGGTCCAACCACCGTCTCCGACGATCAGTCACCCTCGAGATCGGCCTTCCTCGTGACGGCTTCAGCCGTCCCAAGCGGAGGAACAAGCGGAGGAGCAGCAGGAGGGATTAGCTGCCAGGACTGCGGTAACCAGGCGAAGAAGGATTGCCCTCACATGCGGTGCAGGACATGCTGCAAGAGCCGTGGCTTCGATTGCCAAACCCATGTGAAGAGCACTTGGGTTCCCGCTTCGAAGCGCCGCGAGAGGCAGCAGCAACTCGCCGCTATGCAACAGCAACAGCTTCATGGTGCTTCTGATGTTCCCAAGAGGCAGCGAGATCATGTCACTAGTATTACTCGTTTGCCCACAAACCCTTCTCCTTCGGGCTCAGCCTCAGGGATGGAGAATTTTCCAGCAGTGGTGAGCTCCCCAGCTGAATTCAGATGCGTACGTGTGAGCGGAATAGACGACACAGAAGACGAGTATGCATATCAAACGGCTGTCAACATTGGAGGACACCTCTTCAAAGGGATCCTCTATGACCAGGGTCCAGATCATGCCACCACCACCACCACTAACAGCAGCAGCTACGTCGCCGGAGACACCTCCTCCACCGCCGCCGCTGCAGCTCATCACCCTAACCTCAACCTCATTGCTCCCAACACCACAACTTCATCCCTTGTATCCGGCCCACACACAACGCAGCAGCAGCAGCTCGTTGATCCTTCATCATCCATGTATCCACCTCCTCCTCCTCTCAACACCTTCATGGCTGGTAGTAGCGGTACGCAATTCTTCCCTCATCCAAGATCTTGA 1074 0.5456 MAGLFSLGGSSSTNRGGRGSTNQQQQDQQQHPEIPPSDTYYWYKNEDVSSYRGFELWNQHHQHHHQPPEHDLIPQARPLFHQDLYSSAAALGVGPTTVSDDQSPSRSAFLVTASAVPSGGTSGGAAGGISCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPASKRRERQQQLAAMQQQQLHGASDVPKRQRDHVTSITRLPTNPSPSGSASGMENFPAVVSSPAEFRCVRVSGIDDTEDEYAYQTAVNIGGHLFKGILYDQGPDHATTTTTNSSSYVAGDTSSTAAAAAHHPNLNLIAPNTTTSSLVSGPHTTQQQQLVDPSSSMYPPPPPLNTFMAGSSGTQFFPHPRS 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151425g00012 357 Pfam Domain of unknown function (DUF702) 128 271 - -
Stsc151425g00012 357 MobiDBLite consensus disorder prediction 306 329 - -
Stsc151425g00012 357 NCBIfam putative zinc finger domain, LRP1 type 130 172 IPR006510 -
Stsc151425g00012 357 MobiDBLite consensus disorder prediction 306 357 - -
Stsc151425g00012 357 NCBIfam LRP1 C-terminal domain 223 270 IPR006511 -
Stsc151425g00012 357 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 340 IPR007818 GO:0003700|GO:0006355
Stsc151425g00012 357 MobiDBLite consensus disorder prediction 342 357 - -
Stsc151425g00012 357 MobiDBLite consensus disorder prediction 1 35 - -
Stsc151425g00012 357 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151425g00012 Stsc-Chr151425 42791 45714 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151425g00012 1 345 C2H2 Transcription Factor Family AT5G66350 43.094 1.94e-78 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Stsc151425g00012 DUF702 3.2e-66 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151425g00012 - - ahf:112720334 338.576