Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151423g00003 ATGAACTGGAAGAGTTATACTCTCCTTTACTTTTGTTTCTTGTTCCTCTCCAACTTAGCCATATCCATTGAAGCTTATGTTCCAGTTGATAGCTTCAGCATCAACTGTGGCTCATCTGGCAATTCCTCCGACGGTGAAAGGTCATGGAACGGAGACATAGACTCAAAGCTCTTAACTCTTCATGACACAAACACCGTCGTTGCTCAACCAACCACACAAGCTTCTCCAAACCAAGTTCCTTACACCACTGCCCGCTTGTCTAAAACTGAATTCAGTTATTCCTTTCCGGTCACACATGGCCGCAAATTTGTACGTCTCTTCTTCTACCCAGCTTCTTACCCTGGCTTTGACCGTTATAACGCCGTCTTCACAGTCAAATCCGAGGGTTTCACACTCCTCAAGGATTTCAATGCTTCGCTTAACGCTGATGCTGCAAACAAAGACACCATATTTAAAGAGTACATAATCAACGTGGATGATGGGCAGAGGATCAACGTGACTTTCACTCCAAACACATCCCATCCAAATGCATATGCGTTTGTGAATGGAATTGAGGTGGTTTCCATGCCCACTGATCTCTACTTCACTGAACCCACTGCACAACAAATCATATTTGTGGGTCATCCAGGCGTGCCATATAATATGGAAAACAGTAGTGCCCTGGAGACAGATTACAGAATCAAAGTTGGCGGCAACACAATCACTCCTAAAGCTGACAGTGGCATGCTCCGGAACTGGGAAGGAGATGATGCCGATTATTTAATAACACAAACTGCTCTGTATAGTCTATCCGGTGATGTGACCGGAAAGATGAACGTCACCGTGAATCCTGATTATGCAGCACCCACTGAACTCTACAGAACATCACGTGATATGGGCATGAACAAAACTCTCAACCAAATGACTAATTTGACTTGGGAGTTTCCTCTTGATTTTGGCTTCAACTACATGATCAGGCTTCACTTTTGCGAGCTAGACCCAGACATTAACGTACCCAGTGACAGAGCGTTCAACATCTACGTAGCAGGCCAGTTGGTGGAGCACGATGCCTCTGTTCTAACATGGACCAAACAAAAGGGAATTGCTGTACAGAGAGACTATGTAGTTATGATCCAAGGGACTAATCAGCAAAAGTTTAACCTCTCACTCCAATTGCATCCTCTTGGAAGCAGAAACACATTGTACAGCGACACTTTATTGAATGGGCTTGAAATCTTCAAAATTAGTGACCCTGCGTCTAATAACCTCGCAGGACCCAACCCTGACCCTATTCTTCCTCCATTTACCCCACCACACTACTCTGTCAAAAGCCCAAATTCAAAACAGAAGATCATAATAATGGGCCTAGTTGCAGGATTCAGTTTTCTTCTTCCCATTGCAATCTTCCTCCTCCTCCTCCTTACAAAACACAAGATAAAGAGCACAAAAAGATCTTCCCTAATGGCCAACACTCAAACCTTACCATTGCCATCCGGTCTTTGCCGTCGATTTTCCATGGTTGAGATGAAAACAGCCACCAATAGCTTCGACGAGCTTCTCCTCATTGGAGTGGGAGGCTTTGGCAACGTCTACAAAGGCTACATCGACGAAGGCTCAACACCAGTGGCAATCAAACGGTTAAAACCGGGTTCACAGCAAGGGCTTCACGAGTTCACGACCGAAATTCAGATGCTCTCGCAACTCCGCCATCTCCATCTGGTGTCCCTCATCGGTTATTGCTGCGAGAGCAACGAGATGATCTTGGTCTATGATTTCATGCCACGTGGAACCTTACAAGATCATCTCTACAATAACAGCATCCCCTCCCTCTCGTGGAAGCAACGGTTGCAAATCTGCATAGGAGCAGCGAAAGGGCTGCATTATCTCCATGCAGGTGCGGTGCACAATATCATTCACCGTGACGTAAAGAGCACCAATATCTTATTGGATGACAAATGGGTGGCCAAGGTTTCGGATTTCGGGTTGTCCAAAATAGGACCCTCTGGCATTTCAACAACTCACATTAGCACTGTTGTCAAGGGTAGTTTCGGGTATTTAGACCCGGAATATTATAAACGACAGCGTTTAACTCTCAAGTCTGACGTGTACTCCTTCGGTGTGGTGCTGCTTGAGGTGTTGTGTGGGAGAAAGCCTTTGATGAGGACGGTGGAAAAGCAACAGATGTCACTTGCTCATTGGGCTGTATTTTGTTATGAGAATGACACGTTGGATCAGATTGTGGACAAAACGTTAGAGGGTCAGATTGCAGCAGAATGCTTGGCGACGTTCAGTGAGATTGCTGTGAGTTGTTTGCATGAAGATGGTTTACAACGACCCTCCATGGATGAAATTGTTTGGGGTTTGGAGTTTGCATTGCAACTGCAGGAGAGTGCTGATGAGATACATCAAGAACATCTTGATCTTGTTACTGCAACCCAAAATCTTGAAATAGTAGTATAA 2439 0.4514 MNWKSYTLLYFCFLFLSNLAISIEAYVPVDSFSINCGSSGNSSDGERSWNGDIDSKLLTLHDTNTVVAQPTTQASPNQVPYTTARLSKTEFSYSFPVTHGRKFVRLFFYPASYPGFDRYNAVFTVKSEGFTLLKDFNASLNADAANKDTIFKEYIINVDDGQRINVTFTPNTSHPNAYAFVNGIEVVSMPTDLYFTEPTAQQIIFVGHPGVPYNMENSSALETDYRIKVGGNTITPKADSGMLRNWEGDDADYLITQTALYSLSGDVTGKMNVTVNPDYAAPTELYRTSRDMGMNKTLNQMTNLTWEFPLDFGFNYMIRLHFCELDPDINVPSDRAFNIYVAGQLVEHDASVLTWTKQKGIAVQRDYVVMIQGTNQQKFNLSLQLHPLGSRNTLYSDTLLNGLEIFKISDPASNNLAGPNPDPILPPFTPPHYSVKSPNSKQKIIIMGLVAGFSFLLPIAIFLLLLLTKHKIKSTKRSSLMANTQTLPLPSGLCRRFSMVEMKTATNSFDELLLIGVGGFGNVYKGYIDEGSTPVAIKRLKPGSQQGLHEFTTEIQMLSQLRHLHLVSLIGYCCESNEMILVYDFMPRGTLQDHLYNNSIPSLSWKQRLQICIGAAKGLHYLHAGAVHNIIHRDVKSTNILLDDKWVAKVSDFGLSKIGPSGISTTHISTVVKGSFGYLDPEYYKRQRLTLKSDVYSFGVVLLEVLCGRKPLMRTVEKQQMSLAHWAVFCYENDTLDQIVDKTLEGQIAAECLATFSEIAVSCLHEDGLQRPSMDEIVWGLEFALQLQESADEIHQEHLDLVTATQNLEIVV 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151423g00003 812 ProSitePatterns Protein kinases ATP-binding region signature. 515 538 IPR017441 GO:0005524
Stsc151423g00003 812 CDD STKc_IRAK 515 778 - -
Stsc151423g00003 812 ProSiteProfiles Protein kinase domain profile. 509 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151423g00003 812 SMART serkin_6 509 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151423g00003 812 Gene3D Phosphorylase Kinase; domain 1 494 585 - -
Stsc151423g00003 812 FunFam FERONIA receptor-like kinase 219 409 - -
Stsc151423g00003 812 Pfam Malectin-like domain 34 408 IPR024788 -
Stsc151423g00003 812 PANTHER OS03G0124300 PROTEIN-RELATED 11 472 IPR046957 GO:0004672
Stsc151423g00003 812 FunFam Receptor-like protein kinase FERONIA 586 802 - -
Stsc151423g00003 812 Gene3D - 220 408 - -
Stsc151423g00003 812 Gene3D - 31 191 - -
Stsc151423g00003 812 FunFam Receptor-like protein kinase FERONIA 481 585 - -
Stsc151423g00003 812 ProSitePatterns Serine/Threonine protein kinases active-site signature. 630 642 IPR008271 GO:0004672|GO:0006468
Stsc151423g00003 812 Gene3D Transferase(Phosphotransferase) domain 1 586 810 - -
Stsc151423g00003 812 SUPERFAMILY Protein kinase-like (PK-like) 479 782 IPR011009 -
Stsc151423g00003 812 Pfam Protein tyrosine and serine/threonine kinase 515 778 IPR001245 GO:0004672|GO:0006468
Stsc151423g00003 812 FunFam FERONIA receptor-like kinase 31 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151423g00003 Stsc-Chr151423 14980 17418 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151423g00003 21 793 Receptor kinase-like Gene Family AT3G51550 47.975 0.0 715
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Stsc151423g00003 Malectin_like 1.4e-41 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151423g00003 - - gsj:114381619 924.465