Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151422g00004 ATGGAGTGGAATGCTAAATCGCTCGGGCAATGGGATTGGGACAACTTATACTCATTCAATACAAAGCCAACTGAAAATCCCAAGTTGCAACCAACAGATTGGAGCATGGAAGGAGATGGAGAAATCAATGTCGGCTTGATATATCCGTCCGGTGGTAGTGCTTGTTCTGGCTCTGAACTGATTCATGCTTCGTCAAGGAGCTCAAAATCAGCTTCCATGAATTCATCATCGAATGGGGATAGCAAAGCATCCACAACCATGTTCACTTTCGAGCGCTCTCAAGATGACTCAACCGGTAAGAAAGAATTGTCTAAGGAAGAGCCGGTTGAAAATTCTCAAGCACCAGAGCCCTCTTCCGCCTCTGGTGAACCGCTGCTCACTCTAAAGCTTGGTAAACGGTTGTACTTTGAGGATGTTTGTGCAGCAAGTGATTCCAAGAAACCATCTTCCGTCAGCGTTACTACTTCATCTTTGACTCATGGAAAGAAATGTAAGGCCAACAGTCAGAACCTACAACACCCAAGCTGCCAAGTGGAAGGCTGTGGTCTGGACCTCTCATCTGCTAAAGATTACCATCGCAAACACAGGGTTTGCGAAAGCCATTCCAAATCCCCAAGGGTGCTTATAGCTGGTTTTGAACGTCGATTTTGCCAGCAATGCAGCAGGTTCCACGGTCTATCGGAGTTTGATGATAAAAAGAGAAGCTGTAGACGGCGTCTTTCAGATCACAATGCAAGGCGCCGCAAACCTCAGCCTGAAGCAGTCCAACTAAATACATCAGCTTTGTCTTCATCACCCTATGATCCGAGGCAACTAATGAATCCATTCGGTTATTCAAGAACTGCTACAAATATAGGTTGGCAAGATATTCAAAACAGCAGGCTACCCCAGACAAAAGATTTTCTCATGAGGCCTGCGAAGATACCAAGTGTTCTCACTATGCTTTCTGATGGTTCTAGTGGCCTTGCATCCAAAGGCATGGCAACCAATGGTAATTGTCCAGGGAAAGAAGACCCTATTAGCTCGTCCGATACCAACGCCGCACAAGATATCAGTCGTGCTCTCTCTCTTCTGTCAACCAATTCATGGTCTACACATGCTACGACTCAGCGCTTCCCTCTCGCTTCATCACAGTATTGGCACCTTGATCAACAACCAGCAGCCAATCCCAACATGTGTGTCCCATTCTCAGATTCTGATAATAGCAATCGTTTCCAAGAGTTTCAAATGTTTAATGCTCCCTCCTTTGATTCCGGTTATCCTTGCAACCAGCTGGATTAA 1281 0.4582 MEWNAKSLGQWDWDNLYSFNTKPTENPKLQPTDWSMEGDGEINVGLIYPSGGSACSGSELIHASSRSSKSASMNSSSNGDSKASTTMFTFERSQDDSTGKKELSKEEPVENSQAPEPSSASGEPLLTLKLGKRLYFEDVCAASDSKKPSSVSVTTSSLTHGKKCKANSQNLQHPSCQVEGCGLDLSSAKDYHRKHRVCESHSKSPRVLIAGFERRFCQQCSRFHGLSEFDDKKRSCRRRLSDHNARRRKPQPEAVQLNTSALSSSPYDPRQLMNPFGYSRTATNIGWQDIQNSRLPQTKDFLMRPAKIPSVLTMLSDGSSGLASKGMATNGNCPGKEDPISSSDTNAAQDISRALSLLSTNSWSTHATTQRFPLASSQYWHLDQQPAANPNMCVPFSDSDNSNRFQEFQMFNAPSFDSGYPCNQLD 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151422g00004 426 Gene3D - 166 237 IPR036893 GO:0003677|GO:0005634
Stsc151422g00004 426 ProSiteProfiles Zinc finger SBP-type profile. 173 250 IPR004333 GO:0003677
Stsc151422g00004 426 MobiDBLite consensus disorder prediction 57 93 - -
Stsc151422g00004 426 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 60 386 IPR044817 GO:0003677
Stsc151422g00004 426 MobiDBLite consensus disorder prediction 94 109 - -
Stsc151422g00004 426 Pfam SBP domain 176 249 IPR004333 GO:0003677
Stsc151422g00004 426 FunFam Squamosa promoter-binding-like protein 14 167 237 - -
Stsc151422g00004 426 MobiDBLite consensus disorder prediction 56 124 - -
Stsc151422g00004 426 SUPERFAMILY SBT domain 174 255 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151422g00004 Stsc-Chr151422 30564 33470 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151422g00004 1 389 SBP-box Gene Family AT5G43270 41.709 6.18e-65 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Stsc151422g00004 SBP 4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151422g00004 - - gmx:100781289 546.584