Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151419g00002 ATGGGAAGAGGCAGAGGAGCTGCGGCTCTGAAAACTGCGGCGGCGGAGATGCCGGTATTGAAGGAAGTTAGATACCGTGGTGTGAGGAAGAGACCATGGGGAAGATTCGCCGCGGAAATCAGAGACCCATTGAAGAAAGCTAGGGTTTGGCTCGGAACCTTCGATTCCGCCGAGGAAGCTGCACGCGCCTACGACGCCGCCGCGAGGACCCTCCGTGGACCGAAAGCCAAGACCAACTTTCCTCTCTCTTCTTCTCCTTTTTGCTACCAGAATAATCCCCATAGCGCCGTCGTGGATCCGTACTATTACGCCGCCGTGAACGGCGGCGCTCACGGCGGTGACGGCGGCGGGTTTCAGGAGAGTCCGGTGAACCCTCAGAGGCCGACGTGCAGTGGAATGAGCAGCACGGTGGAATCGTTCAGTGGACCGAGGAATATGACGGCGTCGCCGTGTACGGCGGCTCCGGCGACGGCGATGGTGGCGAAGAGGTACCCTAGGACTCCGCCGGTTGTTCCAGAAGATTGTCATAGTGATTGTGATTCTTCGTCGTCGGTGGTTGACGACGGCGATAATATTGTTTCGTCGTCGTTTAGAGCGCCGTTGCCGTTTGATCTCAACGCGCCGCCGTTGGAGGGTGGGGATGATGATGAGCTCCGATGCACCGCTTTGTGCCTTTGA 678 0.5841 MGRGRGAAALKTAAAEMPVLKEVRYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDSAEEAARAYDAAARTLRGPKAKTNFPLSSSPFCYQNNPHSAVVDPYYYAAVNGGAHGGDGGGFQESPVNPQRPTCSGMSSTVESFSGPRNMTASPCTAAPATAMVAKRYPRTPPVVPEDCHSDCDSSSSVVDDGDNIVSSSFRAPLPFDLNAPPLEGGDDDELRCTALCL 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151419g00002 225 Gene3D AP2/ERF domain 23 83 IPR036955 GO:0003700|GO:0006355
Stsc151419g00002 225 MobiDBLite consensus disorder prediction 114 144 - -
Stsc151419g00002 225 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Stsc151419g00002 225 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Stsc151419g00002 225 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 18 191 - -
Stsc151419g00002 225 SUPERFAMILY DNA-binding domain 24 83 IPR016177 GO:0003677
Stsc151419g00002 225 CDD AP2 24 83 IPR001471 GO:0003700|GO:0006355
Stsc151419g00002 225 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Stsc151419g00002 225 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Stsc151419g00002 225 MobiDBLite consensus disorder prediction 122 144 - -
Stsc151419g00002 225 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Stsc151419g00002 225 FunFam Ethylene-responsive transcription factor 2 23 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151419g00002 Stsc-Chr151419 19563 20973 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151419g00002 1 225 AP2-EREBP Transcription Factor Family AT1G50640 58.921 5.88e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc151419g00002 AP2 5.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151419g00002 K09286 - gmx:100820249 238.81