Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151418g00006 ATGGGAAGAAAAAGAAGAAGATCCTCTGTTTTCTACTCTGTTTTCTTCTTCGTCTCTGTTCTCTGTTTTCACTCTCAACTTGCAACCTCAGAGGACGATTCCGAAGCGCTTCTGGCACTGAAATCTTCCATAGACGCACACAACAAGCTTCCATGGCGACCAGGGAGCGATGTGTGCACGTGGCAAGGTGTCAAAGACTGCTTCAATGGAAGGGTAAGAAAGCTCGTTATAGAATATTCCAACCTCACGGGAACTTTAGAATCGAAGATCTTGAACCGTTTGGATCAGCTTCGAGTTCTAAGCTTCAAAGGGAACTCACTCTCTGGTCAAATTCCAAACCTTTCAAGCTTAGTTAACCTCAAATCGATTTTCCTCAACGACAACAACTTCTCCGGCGAGTTTCCGGCGTCTATTTCCGACCTCCACCGTGTAAAAGTCATAGTTTTGTCAGGGAACAGAATCTCCGGCGAAATTCCGGCGTCGTTGCTGAATCTCCGGCGACTCTACATACTCTACTTGGAGGACAACTTGTTCACCGGGAAAATCCCGGGGTTCAACCAGACAAGTCTCAGGTACCTTAATGTTTCGAATAACAAACTTTCCGGCGAGATTCCGGCGACTCCGGCATTGGTACGGTTCAATGCATCTTCATTTTCCGGCAACACTAATCTCTGCGGCGACCAAGTGCACGTGCCATGCAAAAGTAACATCCTTTTGCCTCCTTCTATGAGCCCAAGCTCTTCCATGGTTCCAACAAAGAAGAAAACATCATCGAACCGCACGAAACTGATCAAGATTATTGGAGGAACCGTGGGTGGTGTTGTTTTGTTGCTCATTGTTTTGGTTCTTGTGTTCTTCACGGTTTGTAGAAACCGTAGGAAGAGTGTGAGTGGTGGAGCTAGAAGGAAAGGAAATGGGGTTGGGAGTGTGGAGGAAGTTGAAGATGTTGGCAGCGGCGGAGGCGGTGGTGGCGGCGGCGGAGGTGGCAGCAGTGGTAACAATGAAGGGAAACAAGGTGGTTTTGCATGGGAAGGTGAGGGTCTAGGGAAGTTGGTGTTCCTTGGAGCAGGGGATAATAGGGAAATAATGAGTTACACATTAGAGGATTTGCTTAAGGCTTCAGCTGAGACACTTGGGAGGGGCATTATGGGAAGTACATATAAGGCAGTTATGGAATCAGGGTTCATTGTGACTGTTAAGAGATTGAAGGATGCAAGGTACCCTAATTTGGATGAGTTTAAGGCTCATATTGAAGTTCTTGGTAGGCTTAGGCACCCTAATTTGGTCCCACTTAGGGCTTATTTTCAAGCTAAGGAAGAAAGGCTTCTTGTTTATGATTACTTCCCTAATGGCAGCCTCTTCTCTCTCATTCATGGATCGAAAACATCCGGCGGAGGAAAGCCTCTTCACTGGACATCCTGCCTCAAAATCGCCGAAGATCTCGCGACCGGGCTTCTCTACATCCACCAAAACCCCGGCTTAACTCATGGAAACCTCAAATCTTCTAATGTCTTGTTGGGTTCAGACTTTGAGTCCTGTCTTACTGACTATGGCCTCACAATGTTCCTTAACCCTGACTCAATGGATGAACCAAGTGCTACCTCTTTATTCTACCGAGCACCCGAATGCCGAAGCTTCCAGAGATCTCACACTCAACCGGCCGATGTATACAGCTTCGGAGTCCTTCTCCTCGAACTCTTAACAGGAAAAACACCCTTCCAAGACCTTGTCCAGGAACACGGCTCGGATATACCTAAATGGGTTAAATCGGTGCGCGAGGAAGAGACAGAGTCCGGGGACGATCCTTCCTCGGGCAATGAAGCATCCGAAGAGAAGCTTCAAGCTCTCTTGAACATTGCAATGGCATGTGTTTCGCTGGTGCCGGAGAATCGGCCGACCATGAGGGAAGTTCTGAAGATGATAAGAGACACAAGAGGGGAAGCTCAGGTATCTTCAAATAGTAGTGATCATTCACCAGGTAGATGGTCAGATACAGTTCAAAGCTTTCCAAGGGAAGAACACTTGAGCATATGA 2034 0.4735 MGRKRRRSSVFYSVFFFVSVLCFHSQLATSEDDSEALLALKSSIDAHNKLPWRPGSDVCTWQGVKDCFNGRVRKLVIEYSNLTGTLESKILNRLDQLRVLSFKGNSLSGQIPNLSSLVNLKSIFLNDNNFSGEFPASISDLHRVKVIVLSGNRISGEIPASLLNLRRLYILYLEDNLFTGKIPGFNQTSLRYLNVSNNKLSGEIPATPALVRFNASSFSGNTNLCGDQVHVPCKSNILLPPSMSPSSSMVPTKKKTSSNRTKLIKIIGGTVGGVVLLLIVLVLVFFTVCRNRRKSVSGGARRKGNGVGSVEEVEDVGSGGGGGGGGGGGSSGNNEGKQGGFAWEGEGLGKLVFLGAGDNREIMSYTLEDLLKASAETLGRGIMGSTYKAVMESGFIVTVKRLKDARYPNLDEFKAHIEVLGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLIHGSKTSGGGKPLHWTSCLKIAEDLATGLLYIHQNPGLTHGNLKSSNVLLGSDFESCLTDYGLTMFLNPDSMDEPSATSLFYRAPECRSFQRSHTQPADVYSFGVLLLELLTGKTPFQDLVQEHGSDIPKWVKSVREEETESGDDPSSGNEASEEKLQALLNIAMACVSLVPENRPTMREVLKMIRDTRGEAQVSSNSSDHSPGRWSDTVQSFPREEHLSI 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151418g00006 677 Gene3D Ribonuclease Inhibitor 187 236 IPR032675 -
Stsc151418g00006 677 Pfam Protein kinase domain 375 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151418g00006 677 ProSiteProfiles Protein kinase domain profile. 372 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151418g00006 677 Gene3D Phosphorylase Kinase; domain 1 356 447 - -
Stsc151418g00006 677 Pfam Leucine rich repeat 119 177 IPR001611 GO:0005515
Stsc151418g00006 677 SUPERFAMILY Protein kinase-like (PK-like) 376 652 IPR011009 -
Stsc151418g00006 677 FunFam Nuclear pore complex protein NUP107 30 184 - -
Stsc151418g00006 677 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 18 647 IPR046959 -
Stsc151418g00006 677 MobiDBLite consensus disorder prediction 645 677 - -
Stsc151418g00006 677 Pfam Leucine Rich Repeat 189 206 IPR001611 GO:0005515
Stsc151418g00006 677 Gene3D Transferase(Phosphotransferase) domain 1 448 664 - -
Stsc151418g00006 677 MobiDBLite consensus disorder prediction 296 339 - -
Stsc151418g00006 677 Gene3D Ribonuclease Inhibitor 30 186 IPR032675 -
Stsc151418g00006 677 MobiDBLite consensus disorder prediction 646 677 - -
Stsc151418g00006 677 MobiDBLite consensus disorder prediction 587 609 - -
Stsc151418g00006 677 Pfam Leucine rich repeat N-terminal domain 31 64 IPR013210 -
Stsc151418g00006 677 SUPERFAMILY L domain-like 30 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151418g00006 Stsc-Chr151418 31559 36744 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151418g00006 8 677 Receptor kinase-like Gene Family AT1G60630 61.891 0.0 786
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc151418g00006 Pkinase 7.1e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151418g00006 - - gmx:100820186 956.822