Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151417g00001 ATGGGGAAAGGAAGAGCACCATGCTGTGATAAGTCTCAAGTGAAGAAGGGACCTTGGAGCCCTGCTGAGGATCTTAAGCTTATAGCTTTCATCCAGAAGCATGGCCATGAAAACTGGCGTGCCCTTCCCAAGCAAGCAGGGCTCATGCGATGTGGGAAAAGTTGTCGATTGAGATGGATCAATTATCTGAGGCCAGATGTTAAGAGAGGCAATTTCACAGCAGAGGAAGAAGAAACCATAATAAAGCTACATAAAGCCATGGGAAACAAGTGGTCCAAGATTGCATCACGTTTGCCCGGCAGAACTGACAATGAGATCAAGAATGTGTGGAACACTCACTTGAAGAAAAGATTATCTGCAAAATCTTCAGATTCAGTTGCAGATAACAATAACAATAATGCACATGATGGATCCAGGATTGAATCATCATCAGTCACTTCACCTTCCTCTTCATCTTCATCTGAATCATTTTTCTCAAATGAAGAAACACCAAACACTAACAACAACAACAACAACAACAATCTTTGCAGAGAAACCAATGATCATAATGTTTCTCAAACTGATCAAGAGCCAAAAGGGCCATCAAATTCATCATCATCATCCTCATTATCGTCCTGTGTTGAAAACAAGCACCATGATGATGAAGATCATAATCAACAACAATTGGTGTCTCCACCATTATTGAACTATGTTGGACCCTATGATGTTGATGTTACGTTGGAAGAGGTTGACAAGCCAAACAGCAACAATTTGGAGACAAGAGAAGAAGAAGAAGATGGTGATTTTTGGAAGATGTTAGATAATATTGAAACATTTCTATCATCAAATGAGGTATCTTCTCCTCCTCCTCCTCCTCATCAAAGCCAAACATCACCACCAAATCTTGTTCATCAAGATGATGGTGAAGCCATGATGATGATGATGTGGTCCCATGAGCTTGAGAATGAGCTTAATGGAGTAGTAGCTGATGAAACAACAACAAAAGGGTCAAACAATAACCCTCAACAAGATATAATTATGGACCCAAATGATGATGTATTACATGATCAATTAGAATTAGAATTGGACTTGGGTTTTATTCAATTGTGGCCCTCTCTGCCACAAAATACTCCTTAA 1116 0.397 MGKGRAPCCDKSQVKKGPWSPAEDLKLIAFIQKHGHENWRALPKQAGLMRCGKSCRLRWINYLRPDVKRGNFTAEEEETIIKLHKAMGNKWSKIASRLPGRTDNEIKNVWNTHLKKRLSAKSSDSVADNNNNNAHDGSRIESSSVTSPSSSSSSESFFSNEETPNTNNNNNNNNLCRETNDHNVSQTDQEPKGPSNSSSSSSLSSCVENKHHDDEDHNQQQLVSPPLLNYVGPYDVDVTLEEVDKPNSNNLETREEEEDGDFWKMLDNIETFLSSNEVSSPPPPPHQSQTSPPNLVHQDDGEAMMMMMWSHELENELNGVVADETTTKGSNNNPQQDIIMDPNDDVLHDQLELELDLGFIQLWPSLPQNTP 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151417g00001 371 MobiDBLite consensus disorder prediction 274 298 - -
Stsc151417g00001 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Stsc151417g00001 371 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Stsc151417g00001 371 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Stsc151417g00001 371 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 216 - -
Stsc151417g00001 371 Gene3D - 15 68 - -
Stsc151417g00001 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Stsc151417g00001 371 CDD SANT 71 114 IPR001005 -
Stsc151417g00001 371 MobiDBLite consensus disorder prediction 117 230 - -
Stsc151417g00001 371 Gene3D - 70 141 - -
Stsc151417g00001 371 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Stsc151417g00001 371 CDD SANT 18 63 IPR001005 -
Stsc151417g00001 371 FunFam Transcription factor RAX3 9 69 - -
Stsc151417g00001 371 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Stsc151417g00001 371 MobiDBLite consensus disorder prediction 123 206 - -
Stsc151417g00001 371 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Stsc151417g00001 371 SMART sant 15 65 IPR001005 -
Stsc151417g00001 371 SMART sant 68 116 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151417g00001 Stsc-Chr151417 11304 15351 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151417g00001 1 161 MYB Transcription Factor Family AT1G56160 62.722 3.47e-72 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc151417g00001 Myb_DNA-binding 1.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151417g00001 K09422 - gmx:100101836 301.982