Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151412g00007 ATGAGTTCTAATTCTAATAAACCAGTTCTCTCTGATTCAGATCTTCCTTCACTGATCCAACATCGCCAGAAGAAATCAGGATCCATAGCTTCTTCTGAGATTGAGGATGCTTCTGAATCTCATCATAAAACAGGTTTTGATCTAAGGGAAGACAGAGACTTTGATTTAGCTAGTGAAGCTAGCTTCCATTCAGCAGTTGAGACCTATTCCTCTTTTGGGACAGAGAAAGATTTCAATTCTGGTGAGTCCCATTTGCCCCACAAACACCACAAGCACCCTTTGGAATGCTCCACGAAGGAGAGGGTGCGAGGGGTATCGTGGGGTGCAATGGAACTGCATGATGCCACCACCAATAGTAGTAGCACTAGTGTGCCATTTGAAATCTCAGGTGCTTCGTCACAACAGCATGTAGTTCATCATGATAATAGGCTGAGTACTAATCACAATAACTATAGTAAGTCTCAGAGGGTTAGGCACAAGAGCAACGTGCAGTTTGATGATGTTTTGTTGCACGATGATAGTGCTAGGTTGATATACATTAATGATCCTAAGAGGACTGATGATAAGTATGGATATGAAGACTGGCGGCGGCACCGGTCTGATCGCAATGAGAACAACCGGGAATCACTGGTCCTTCAGCATGACGATTTCCGGCCAAAGAAGTGGAAAAATATACAAGCTGGTGAGGTTGTTAAGATCTTTGCTGATGAGACTATTCCAGCTGACATGGTCTTGCTGGGGACAAGTGATCAAAGTGGGCTTGCTTATATTCAGACAATGAATTTGGATGGAGAGTCAAATTTGAAGACTAGGTATGCTAAGCAGGAAACAACTAATGCAGTTTCTTCAGAAGGTTGTCATGTTTCTGGGGTTATCAGATGCGAGCAGCCTAACCGGAATATTTATGAGTTCACGGCAAACATGGAATTCAATGGGCTTAAGTTTTCGCTTAGCCAGTCTAACATTGTTCTGCGTGGTTGCCAACTGAAGAACACGGATTGGATCATTGGTGTTGTGGTTTATGCTGGACAAGACACGAAAGCAATGATGAACAGCACACCTTCTCCTTCTAAGAGAAGCAAACTGGAAAGTTACATGAACAGAGAAACCCTTTGGTTGTCAATTTTTCTTTTTACCATGTGTTTAGTTGTTGCCATTGGCATGTGTCTTTGGCTGGTGCGGCACAACAGCCAGCTTGATACCTTGCCTTACTACAGAAAACGATACTTCAACAATGGGCCAGATAATAGAAAGAGATACAAGTATTATGGGATACCAATGGAAGCATTTTTCTCCTTCTTGAGTTCCATTATAGTGTTTCAGATAATGATACCTATATCTCTTTACATCACAATGGAATTGGTTCGTTTGGGCCAGTCATACTTCATGATTGAAGATGGGGATATGTATGATGCTGGCTCTGGATCAAGGTTTCAGTGTAGGTCATTAAATATAAACGAAGATTTGGGTCAAATACGCTATATATTTTCAGACAAGACAGGAACACTAACTGAAAACAAAATGGAATTCCGGAGGGCGAGTGTAAATGGGAAGAATTATGGGAACTCGTTGGCCATGGCTGATGATACAGCAGCTGCAGCTGTTATTCCTAGACGTAGATGGAAGCTTCAATCTGAAATTGCAGTTGATCCTGAACTGCTGACTGTGTTGCAGAGGGAATCACATGGAGATGACCGAATAGCCGCTCATGAGTTTTTTCTTACATTGGCAGCTTGCAATACTGTGATCCCTATTCCTACTGGTGATACATTTTCCAGAACAGGTGATACAAATGAAGATATGGAAGGTATTGAGTACCAGGGAGAATCTCCTGATGAACAAGCTCTAGTTTCTGCTGCTTCTGCATATGGATATACTCTTTTTGAGCGAACATCTGGACACATCGTTATCGACGTCAATGGTGAGAAGCTCAGATTGGATGTATTGGGCCTACACGAGTTTGATAGTGTGCGCAAGAGGATGTCTGTTGTTATTCGTTTTCCCAACAACGTTGTAAAGGTGTTAGTCAAAGGTGCTGATACTACAATGTTTAGCATTTTAGCGAACGACAGTGAGAGCCACAATACCATACGAGATGTAACTCAGAGTCATCTGAACGAATATTCTTCAATAGGTCTCCGCACTCTTGTAGTTGCATCTAGGGATGTTTCAGATGCTGAACTTGAAGAGTGGCAGAGCATGTATGAAGAGGCCAGCACTTCTTTGCATGAAAGAGCTGCTAAACTACGCCAGACAGCGGCGTTTATAGAATGCAACTTAAAGCTACTTGGAGCAACTGGAATTGAGGACAAGCTGCAAGAGGGTGTACCAGAAGCGATTGAGTCCCTGCGGCAAGCTGGAATCAAGGTCTGGGTTCTTACAGGTGATAAGCAAGAGACAGCAATTTCAATTGGTCTCTCTTGCAAACTTCTCACTCCAGATATGCAACAGATTATTATAAATGGCACTTCAGAGGTTGATTGTCGTAATCTTTTGGGTGATGCTAAAGCTAAATATGGTGTGAAGTCTTCAACTAATCAGAATCGAAAACAAAAATCCAATGCTGGACTTGGTGATCTTGATATTCCCAATGGATCAAAGTCATTGAGTTTGCCTAAGTGGAATCCAGGACAAGAAGAAGGAACTACTGCTCCATTGGCACTCATAATTGATGGGAACAGTTTGGTTTATATTTTGGAGAAGGAATTAGAATCAGAGCTGTTCGACCTGGCAACTTCCTGGGCCAATGATGTATCGATGATCCAAATGGCAGATGTTGGTGTTGGAATATGTGGGCAGGAAGGGCGCCAAGCAGTGATGGCATCAGATTTTGCAATGGGGCAATTTCGGTTCTTGAAAAAATTACTCCTGGTTCATGGGCACTGGAATTATCAGCGTGTGGCTTACTTGGTTCTGTACAACTTTTACCGCAATGCTGTCTTTGTATTGATGTTATTCTGGTATATATTATGCACTGCTTTCTCTACAACGTCTGCGTTGACAGATTGGAGTAGTGTATTCTATTCTGTGATATACACATCTGTACCTACCATTTTTGTTGGTATTCTAGACAAAGACTTGAGCCATAGGACACTGTTGAAGTATCCAAAGCTGTACGCAGCTGGTCACAGACAAGAGGCATACAATTTGCAATTATTCTGGATTACAATGATTGACACAGTCTGGCAGAGCCTTGTTCTGTTCTACACACCTTTGTTCACATACAAGGACAGCACAATCGATATATGGAGCATGGGCAGTTTGTGGACAATTGCGGTTGTTATTCTTGTGAATGTACACCTGGCCATGGATATCAACCGTTGGGTATTAATTACTCATGCTGCTGTATGGGGATCAATAATCATTACATATGGTTGCATGGTAGTGTTGGATTCGATACCCGTCTTTCCCAATTACTGGACTATTTATCATCTGGCGGTATCCCCTACATATTGGATAACAATTGTACTTATAATTATCGTAGCGCTGCTCCCTCGCTTTACTTGTAAAGTTGTTTGCCAAATATTTTGGCCTTCGGATATCCAGATAGCTAGAGAAGCTGAGCTACTGAGAAAACGACATAATCATGTGCAGTCGAGGCAACAAGTTTCCAGTTAA 3618 0.4215 MSSNSNKPVLSDSDLPSLIQHRQKKSGSIASSEIEDASESHHKTGFDLREDRDFDLASEASFHSAVETYSSFGTEKDFNSGESHLPHKHHKHPLECSTKERVRGVSWGAMELHDATTNSSSTSVPFEISGASSQQHVVHHDNRLSTNHNNYSKSQRVRHKSNVQFDDVLLHDDSARLIYINDPKRTDDKYGYEDWRRHRSDRNENNRESLVLQHDDFRPKKWKNIQAGEVVKIFADETIPADMVLLGTSDQSGLAYIQTMNLDGESNLKTRYAKQETTNAVSSEGCHVSGVIRCEQPNRNIYEFTANMEFNGLKFSLSQSNIVLRGCQLKNTDWIIGVVVYAGQDTKAMMNSTPSPSKRSKLESYMNRETLWLSIFLFTMCLVVAIGMCLWLVRHNSQLDTLPYYRKRYFNNGPDNRKRYKYYGIPMEAFFSFLSSIIVFQIMIPISLYITMELVRLGQSYFMIEDGDMYDAGSGSRFQCRSLNINEDLGQIRYIFSDKTGTLTENKMEFRRASVNGKNYGNSLAMADDTAAAAVIPRRRWKLQSEIAVDPELLTVLQRESHGDDRIAAHEFFLTLAACNTVIPIPTGDTFSRTGDTNEDMEGIEYQGESPDEQALVSAASAYGYTLFERTSGHIVIDVNGEKLRLDVLGLHEFDSVRKRMSVVIRFPNNVVKVLVKGADTTMFSILANDSESHNTIRDVTQSHLNEYSSIGLRTLVVASRDVSDAELEEWQSMYEEASTSLHERAAKLRQTAAFIECNLKLLGATGIEDKLQEGVPEAIESLRQAGIKVWVLTGDKQETAISIGLSCKLLTPDMQQIIINGTSEVDCRNLLGDAKAKYGVKSSTNQNRKQKSNAGLGDLDIPNGSKSLSLPKWNPGQEEGTTAPLALIIDGNSLVYILEKELESELFDLATSWANDVSMIQMADVGVGICGQEGRQAVMASDFAMGQFRFLKKLLLVHGHWNYQRVAYLVLYNFYRNAVFVLMLFWYILCTAFSTTSALTDWSSVFYSVIYTSVPTIFVGILDKDLSHRTLLKYPKLYAAGHRQEAYNLQLFWITMIDTVWQSLVLFYTPLFTYKDSTIDIWSMGSLWTIAVVILVNVHLAMDINRWVLITHAAVWGSIIITYGCMVVLDSIPVFPNYWTIYHLAVSPTYWITIVLIIIVALLPRFTCKVVCQIFWPSDIQIAREAELLRKRHNHVQSRQQVSS 1205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151412g00007 1205 Gene3D - 479 492 - -
Stsc151412g00007 1205 Gene3D - 140 352 - -
Stsc151412g00007 1205 ProSitePatterns E1-E2 ATPases phosphorylation site. 498 504 IPR018303 -
Stsc151412g00007 1205 PRINTS P-type cation-transporting ATPase superfamily signature 786 796 - -
Stsc151412g00007 1205 PRINTS P-type cation-transporting ATPase superfamily signature 911 930 - -
Stsc151412g00007 1205 PRINTS P-type cation-transporting ATPase superfamily signature 496 510 - -
Stsc151412g00007 1205 MobiDBLite consensus disorder prediction 1 34 - -
Stsc151412g00007 1205 Gene3D - 915 956 IPR023214 -
Stsc151412g00007 1205 Gene3D - 493 505 IPR023214 -
Stsc151412g00007 1205 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 189 913 - -
Stsc151412g00007 1205 Gene3D - 606 740 IPR023299 GO:0000166
Stsc151412g00007 1205 MobiDBLite consensus disorder prediction 842 875 - -
Stsc151412g00007 1205 FunFam Phospholipid-transporting ATPase 606 750 - -
Stsc151412g00007 1205 Pfam E1-E2 ATPase 210 454 - -
Stsc151412g00007 1205 NCBIfam phospholipid-translocating P-type ATPase 189 912 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Stsc151412g00007 1205 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 502 776 IPR023299 GO:0000166
Stsc151412g00007 1205 SUPERFAMILY Calcium ATPase, transmembrane domain M 192 1178 IPR023298 -
Stsc151412g00007 1205 NCBIfam HAD-IC family P-type ATPase 429 525 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc151412g00007 1205 NCBIfam HAD-IC family P-type ATPase 756 811 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc151412g00007 1205 Pfam Cation transport ATPase (P-type) 599 684 - -
Stsc151412g00007 1205 Pfam Phospholipid-translocating P-type ATPase C-terminal 939 1179 IPR032630 -
Stsc151412g00007 1205 SUPERFAMILY HAD-like 483 955 IPR036412 -
Stsc151412g00007 1205 Gene3D - 760 914 IPR023214 -
Stsc151412g00007 1205 Gene3D - 506 522 IPR023299 GO:0000166
Stsc151412g00007 1205 FunFam Phospholipid-transporting ATPase 186 351 - -
Stsc151412g00007 1205 SUPERFAMILY Calcium ATPase, transduction domain A 207 349 IPR008250 -
Stsc151412g00007 1205 FunFam Phospholipid-transporting ATPase IC 493 505 - -
Stsc151412g00007 1205 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151412g00007 Stsc-Chr151412 25270 31784 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151412g00007 189 1190 Primary Pumps ATPases AT5G04930 53.372 0.0 1098
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151412g00007 K14802 - gmx:100812459 1747.25