Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151412g00001 ATGGTTTCCTCTCAGCTTTCTGGTTTGACTACAGTTGGTACATGTAAGCCTTCCAAGGCTCAGTTGCTCTTTCCTACAAGCCTTCCTGAAATCGTAATCACAGATCACATTGAGCTAGATTTCTCGGATGTCTTTGGTCCAGTTCCAGTTCCACCCTCACTAGAAGTAAATAATATTGAATCTGCTGCTGCAGAGTCTTTCGAAGAATCTAATGANNNNNNNNNNTATGATGAGCCTGAAGTCATTTACACCCGTTCACATTCTTTGGTTGGCCCTTCTGCTTGTGTCAGTCAATCGCTGAAGCTTGGAAAGCTCACCATACAAGAAACTGTGGATTCGTTGGAACTAGAGGTCCTTGAGGAGGATGTGACTGGAGAGACTGTCGAAGACGTCAAAGAACCTTCCTTTGACAATTTTATCACTGAGGAATCGTTGCAAGATGATGGGAGTCTCATGAAGATCCAGAGAGTTAGCCTTGATGATTTTGAGATTTTGAAGGTTGTGGGGCAGGGAGCATTTGCAAAAGTATATCAGGTCAAGAAAAAAGGCACTTCTGAAATATATGCTATGAAGGTTATGAGGAAGGACAAAATTATGGAAAAGAACCATGCTGAGTACATGAAAGCTGAGAGGGATATTCTGACACAAATAGAGCATCCTTTTGTTGTACAGCTCAGATACTCATTTCAGACAAAATATAGATTGTATCTTGTGCTGGATTTCGTGAATGGAGGCCATCTTTTCTTTCAACTTTATCACCAGGGCTTGTTCAGAGAGGATCTAGCACGCATATATGCTGCCGAGATCGTATCTGCAGTTTCACATCTCCATTCGAATGGAATAATGCACAGGGATCTAAAACCTGAAAATATCTTGCTGGATGCTGATGGCCACGTTATGTTAACTGATTTTGGTTTAGCAAAGCAATTTGAGGAGAGTACAAGATCAAATTCTATGTGTGGAACATTAGAGTACATGGCACCTGAAATCATTCTTGGCAAGGGCCATGATAAGGCTGCTGATTGGTGGAGTGTGGGCATCCTTCTGTTTGAGATGCTTACTGGAAAGCCACCGTTTTGTGGTGGAAACCGTGAGAAGATTCAGCAGAAGATAATTAAAGACAAGATTAAGCTGCCAGCTTTTTTGTCTAGTGAGGCGCATTCACTGTTGAAAGGGCTGCTACAGAAGGAGGCGGCAAAGCGCTTAGGTTCTGGACCTAAGGGGATCACGGAGATTAAAGGCCACAAGTGGTTTAAACAAATCAACTGGAAGAAGTTGGAAGCAAGAGAAGTCCAGCCGAGTTTTAGGCCAGATGTAGCCGGGAAGCATTGCGTTGCCAACTTTGAGAAGCGATGGACTGATATGCCTGTGGTCGACTCACCAGCTGCCAGCCCCAACGGTGCAAACCCCTTCAAAGACTTCTCTTATGTGAGGCCTGCAGCCTCCTTTCTTCAAAGGAATAGCCCTGCTTGTTAA 1476 0.4356 MVSSQLSGLTTVGTCKPSKAQLLFPTSLPEIVITDHIELDFSDVFGPVPVPPSLEVNNIESAAAESFEESNXXXXYDEPEVIYTRSHSLVGPSACVSQSLKLGKLTIQETVDSLELEVLEEDVTGETVEDVKEPSFDNFITEESLQDDGSLMKIQRVSLDDFEILKVVGQGAFAKVYQVKKKGTSEIYAMKVMRKDKIMEKNHAEYMKAERDILTQIEHPFVVQLRYSFQTKYRLYLVLDFVNGGHLFFQLYHQGLFREDLARIYAAEIVSAVSHLHSNGIMHRDLKPENILLDADGHVMLTDFGLAKQFEESTRSNSMCGTLEYMAPEIILGKGHDKAADWWSVGILLFEMLTGKPPFCGGNREKIQQKIIKDKIKLPAFLSSEAHSLLKGLLQKEAAKRLGSGPKGITEIKGHKWFKQINWKKLEAREVQPSFRPDVAGKHCVANFEKRWTDMPVVDSPAASPNGANPFKDFSYVRPAASFLQRNSPAC 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151412g00001 491 Pfam Protein kinase domain 162 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151412g00001 491 FunFam Non-specific serine/threonine protein kinase 242 437 - -
Stsc151412g00001 491 Gene3D Phosphorylase Kinase; domain 1 159 460 - -
Stsc151412g00001 491 Gene3D Transferase(Phosphotransferase) domain 1 242 437 - -
Stsc151412g00001 491 Pfam Protein kinase C terminal domain 440 476 IPR017892 GO:0004674|GO:0005524|GO:0006468
Stsc151412g00001 491 FunFam Non-specific serine/threonine protein kinase 159 265 - -
Stsc151412g00001 491 ProSitePatterns Protein kinases ATP-binding region signature. 168 191 IPR017441 GO:0005524
Stsc151412g00001 491 ProSiteProfiles AGC-kinase C-terminal domain profile. 419 486 IPR000961 GO:0004674|GO:0005524|GO:0006468
Stsc151412g00001 491 SUPERFAMILY Protein kinase-like (PK-like) 159 479 IPR011009 -
Stsc151412g00001 491 SMART serkin_6 162 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151412g00001 491 ProSitePatterns Serine/Threonine protein kinases active-site signature. 281 293 IPR008271 GO:0004672|GO:0006468
Stsc151412g00001 491 PANTHER RIBOSOMAL PROTEIN S6 KINASE 125 481 - -
Stsc151412g00001 491 ProSiteProfiles Protein kinase domain profile. 162 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151412g00001 491 SMART pkinase_C_6 419 478 IPR000961 GO:0004674|GO:0005524|GO:0006468
Stsc151412g00001 491 CDD STKc_AGC 168 418 IPR045270 GO:0004674|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151412g00001 Stsc-Chr151412 531 4604 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151412g00001 1 488 AGC Kinase Gene Family AT3G08720 67.617 0.0 666
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC-Pl Stsc151412g00001 Pkinase 8.9e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151412g00001 K04688 - gmx:100805922 777.704