Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151411g00005 ATGGAGCAGCGAAAGCTTGTGGTTTTGGGTATTCCATGGGACGTGGACACCGAGGGCTTGAGGGAATACATGAGCAAGTACGGTGAATTGGAAGATTGTATTGTCATGAAGGAGCGGTCAACTGGACGATCTCGTGGATTTGGATATGTGACATTTGCTTCAGTGGATGATGCCAAGGATGTACTCTCAGGCGAACATGTTCTTGGCAACAGGATGCTGGAAGTTAAAGTGGCCACACCAAAGGAGGAGATGAGAGCACCAGCCAAAAAAGTAACCAGAATATTTGTAGCCAGGATTCCACAATCAGTAACAGAAGCATCTTTTAGAAGTCATTTTGAGAAATATGGCGATATAACAGATCTGTATATGCCAAAGGATCAAGGATCAAAAATGCATCGTGGGATTGGTTTTATCACCTTTGCAAGTGCAGATTCTGTTGAGAGTTTGATGGCGGAAACCCATGAACTGGGAGGTTCTACCGTGGATGATGACTTCAAGCCAGTAGGCAGAGTGCCACAGGGAGGGTATGGTGCATACAATGCTTATATTTCTGCAGCAACTAGATATGCAGCACTTGGTGCTCCTACTTTGTATGATCATCCAGGCCCAGTCTATGGAAGAGGAGAACCATCTCGTGGAATTGGTAAAAAGATTTTTGTTGGCCGACTCCCCCCCGAGGCAACTTCTGAGGATCTTCGACAATATTTTGGAAGATTTGGCCGTATATTAGATGTTTACGTTCCCAGGGATCCTAAGAGATCAGGTCATAGAGGTTTTGGATTTGTTACTTTTGCTGAAGATGGTGTGGCAGATCGTGTCTCAAGAAGGCCTCATGAAATTTGCGGACACCAGGTAGCATTGGATTCAGCCACACCAGTTGATGATGCAAGTCCCAGTGGGAATTTTATGATGAATGGCATGGGTTCTTACGGGGGTTATGGAGGTCCTATGCGAACTTATGGGAGGATGTATGGTAGCCTAGACTTCGACGATTGGGGTTATGGAATTCCCAGTGGGAGACCATCTAGAGCAGATTGGAGGTATAGGCCATACTAG 1056 0.4574 MEQRKLVVLGIPWDVDTEGLREYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKDVLSGEHVLGNRMLEVKVATPKEEMRAPAKKVTRIFVARIPQSVTEASFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFASADSVESLMAETHELGGSTVDDDFKPVGRVPQGGYGAYNAYISAATRYAALGAPTLYDHPGPVYGRGEPSRGIGKKIFVGRLPPEATSEDLRQYFGRFGRILDVYVPRDPKRSGHRGFGFVTFAEDGVADRVSRRPHEICGHQVALDSATPVDDASPSGNFMMNGMGSYGGYGGPMRTYGRMYGSLDFDDWGYGIPSGRPSRADWRYRPY 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151411g00005 351 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 170 IPR000504 GO:0003723
Stsc151411g00005 351 FunFam RNA-binding family protein isoform 1 213 296 - -
Stsc151411g00005 351 SUPERFAMILY RNA-binding domain, RBD 216 316 IPR035979 GO:0003676
Stsc151411g00005 351 SMART rrm1_1 93 162 IPR000504 GO:0003723
Stsc151411g00005 351 SMART rrm1_1 217 288 IPR000504 GO:0003723
Stsc151411g00005 351 SMART rrm1_1 5 76 IPR000504 GO:0003723
Stsc151411g00005 351 SUPERFAMILY RNA-binding domain, RBD 4 152 IPR035979 GO:0003676
Stsc151411g00005 351 Gene3D - 215 296 IPR012677 -
Stsc151411g00005 351 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 63 IPR000504 GO:0003723
Stsc151411g00005 351 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 218 271 IPR000504 GO:0003723
Stsc151411g00005 351 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 152 IPR000504 GO:0003723
Stsc151411g00005 351 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 216 292 IPR000504 GO:0003723
Stsc151411g00005 351 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Stsc151411g00005 351 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 213 323 - -
Stsc151411g00005 351 FunFam heterogeneous nuclear ribonucleoprotein 1 2 83 - -
Stsc151411g00005 351 Gene3D - 85 167 IPR012677 -
Stsc151411g00005 351 Gene3D - 1 84 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151411g00005 Stsc-Chr151411 18530 22263 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151411g00005 6 265 Eukaryotic Initiation Factors Gene Family AT2G36660 24.621 3.09e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151411g00005 K14411 - gmx:100795240 638.262