Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151409g00002 ATGAAGAGAAACTCTCTCTGGGCAGCCTTCATTACATCGCTTTTCCTCCTAAAAGTTGTCAATTGCGTTGAGGATGAAGTCAAGAGCACAATGATACTCTTCCTTGCACAACTCTCTGGTAATGATGATAGTCAGCAGAATTTCACTTTGAATTGGAAACTAGGCTCCGATCCTTGCATAGACCAATGGCAAGGAGTAGTGTGTGATACTCGAAACTCTTCGGTCAAGAATTTGTTACTAGACAGGCTAAGCTTATCTGGAACTCTTGATGTTGCTATGCTTTGCAACTTGCCTCCTTTAGCTGCATCTCTGACTTATCTTAGTCTCGACCGCAACAACATCAACGGAGGCATCTCTGAAGAGATTGCGAGGTGCAAACAACTGACAAGCCTACACTTAAGCGGAAACCATCTTTCTGGAAACCTTCCAACTACGCTTTCCAAGTTAACCAATTTAGAGAGATTGGATATATCTAACAACAACTTTTGGGGACGGTTACAACCTGATTTAGCTGGAATCTCAAACCTGAAAATGTTCCTAGCACAGAATAATCATCTCAGTGGAGAAATACCGCCGTTTAATTTCTCCAATTTCGACCAGTTTGATGTCTCCTTCAACAATTTCAGTGGAGTTATTCCAGATGTACATGGCCATTTCGCAGCAGAAAGCTTTCTCGGTAACCCTCAGCTCTGTGGTACTCCATTACCAAAGAATTGCAGTGGCTCCCCAGTGGCTGGTACTAGCGAAAATTCAGAAGAACAGAAGGAATCATCAGCACAGCCCCCTTCACATTCCCCTGCAATTGCCGGCGACAGTTCGGAAGAAACAAAGAAATCATCAAATGGCCCTTCAAGAGAGCAGATTCTTATGTATTCAGGCTATGCGGCGATCGGAGCTTTCGTGATCCTTGTAATTGTGTGGAAGCTGTGCACAAGAAGAAGGAAAGAAAAGAGAATTGAAGCGTTGAATGAGAAAGCTGTAAATCAAGAAGGTAGTACTCAAAAGGCTAACTATGTTTCAAGTGAAAACAGAGCAGGGGTAAGCCGATCAGACTTCTCGGTAACTTCCGAAAGCGGCATGGTTTCGCAATCACTTGTGGTTCTTTCGAGGAACACTATGCATGAATTGAAGCTAGAAGACTTGCTTAAGGCACCTGCTGAATTGATCGGAAGAGGAAAGAATGGTAGCCTCTATAAGGTGGTTCTTGAAAATGGGAAAATGGTGGTTGTGAAAAGGATCATCGATAGGTCTGTTCCTGGCAGCGATTTCAAGCAAAGAATGCAAATTTTGAGTCAAGTGAAGCACCCTTATGTGATGTCACCTCTTGCTTTCTATTGCTCCAAGCAAGAGAAGCTTTTGGTCTATGAATATCAGCAAAATGGGAGTTTATTTAAGCTTCTACATGGTGCCCAAAAATCGTTTGACTGGACCAGCAGACTTGGGATTGCAGCTACCACTGCTGAGGCATTAGCCTTCATGCATCAAGAACTTGGCCAACAAGGCATCACACATGGCAACCTAAAATCATCCAACATTTTGCTAAACATGAATATGGAGCCATGCATTAGCGAGTATGGTGTGATGGGTGGGGAAGACTACCAACAACAGCAACAGCAACAACAACATAGTTCTTCTTTCCTTAGTTCTTTCACCTCCATCGCGTCATCAGATCCCACCACCTTCAAGGAAGATGTCTATGGATTCGGCGTCATTTTGCTCGAACTACTTACCGGAAAGTTGGTAAAGAGCGAAGGGATGGAGTTGACGGAGTGGGTTCAGTCAGTTGTTAGGGAAGAATGGACAGGGGAAGTGTTTGACAGGACTCTGATCTCAGAGTATGCAAGTGAAGAAAGGATGGTCAATTTGCTTCAGGTGGCTATAAGGTGTGTAAATCGTTCCCCTGAGGCTAGGCCAAGTATGAACCAAGTTGCTCTAATGATTAACACTATAAAGGAGGAAGAAGAAAAGTCTTTGATCTATGAAGTGTGA 1989 0.4354 MKRNSLWAAFITSLFLLKVVNCVEDEVKSTMILFLAQLSGNDDSQQNFTLNWKLGSDPCIDQWQGVVCDTRNSSVKNLLLDRLSLSGTLDVAMLCNLPPLAASLTYLSLDRNNINGGISEEIARCKQLTSLHLSGNHLSGNLPTTLSKLTNLERLDISNNNFWGRLQPDLAGISNLKMFLAQNNHLSGEIPPFNFSNFDQFDVSFNNFSGVIPDVHGHFAAESFLGNPQLCGTPLPKNCSGSPVAGTSENSEEQKESSAQPPSHSPAIAGDSSEETKKSSNGPSREQILMYSGYAAIGAFVILVIVWKLCTRRRKEKRIEALNEKAVNQEGSTQKANYVSSENRAGVSRSDFSVTSESGMVSQSLVVLSRNTMHELKLEDLLKAPAELIGRGKNGSLYKVVLENGKMVVVKRIIDRSVPGSDFKQRMQILSQVKHPYVMSPLAFYCSKQEKLLVYEYQQNGSLFKLLHGAQKSFDWTSRLGIAATTAEALAFMHQELGQQGITHGNLKSSNILLNMNMEPCISEYGVMGGEDYQQQQQQQQHSSSFLSSFTSIASSDPTTFKEDVYGFGVILLELLTGKLVKSEGMELTEWVQSVVREEWTGEVFDRTLISEYASEERMVNLLQVAIRCVNRSPEARPSMNQVALMINTIKEEEEKSLIYEV 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151409g00002 662 ProSitePatterns Protein kinases ATP-binding region signature. 389 411 IPR017441 GO:0005524
Stsc151409g00002 662 Gene3D Ribonuclease Inhibitor 29 196 IPR032675 -
Stsc151409g00002 662 Pfam Protein kinase domain 387 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151409g00002 662 Gene3D Ribonuclease Inhibitor 197 237 IPR032675 -
Stsc151409g00002 662 MobiDBLite consensus disorder prediction 239 283 - -
Stsc151409g00002 662 PANTHER OS05G0588300 PROTEIN 10 652 - -
Stsc151409g00002 662 SUPERFAMILY L domain-like 54 219 - -
Stsc151409g00002 662 Coils Coil 312 332 - -
Stsc151409g00002 662 ProSiteProfiles Protein kinase domain profile. 383 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151409g00002 662 SUPERFAMILY Protein kinase-like (PK-like) 386 646 IPR011009 -
Stsc151409g00002 662 Gene3D Phosphorylase Kinase; domain 1 350 457 - -
Stsc151409g00002 662 Gene3D Transferase(Phosphotransferase) domain 1 459 661 - -
Stsc151409g00002 662 FunFam Leucine-rich repeat receptor protein kinase EMS1 97 193 - -
Stsc151409g00002 662 Pfam Leucine rich repeat N-terminal domain 34 69 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151409g00002 Stsc-Chr151409 6445 9139 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151409g00002 52 651 Receptor kinase-like Gene Family AT1G68400 35.922 3.28e-97 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc151409g00002 Pkinase 4.6e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151409g00002 - - aip:107605318 1052.74