Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151408g00003 ATGGTGTCGGTGAATCCGAACCCAGCTCAAGGATTTTACTTCTTCGATCCTTCTTCGTCGAATATGGGGCTTCCTGGTGTTAATCCGATGCCGCCTCCGCCGACGCAGCATGCTCCGGCAGCTGTACCGTCAGCTGCGTCGTCCGCCGTTAACGTGGCGGAGGATCCGAATAAGAAGATCAGGAAACCCTACACGATTACTAAGTCTAGAGAGAGCTGGACTGAGCAGGAGCATGACAAGTTTCTAGAAGCTCTTCAATTATTTGATCGTGATTGGAAGAAGATTGAAGCATTTGTCGGCTCAAAAACTGTTATCCAGATACGGAGTCATGCACAAAAATATTTCCTTAAAGTCCAGAAGAATGGGACAAGTGAACATGTGCCTCCGCCTCGGCCAAAGAGAAAAGCTGCCCATCCATACCCTCAAAAAGCTCCAAAGAGTGCTCCTACTGCATCCCATGTCACCGGGCCATTGCAATCTTCCTCAGCTTTCATTGAACCTGCATACATTTATAGCCAGGATTCATCATCTGTGCTAGGAACTCCAGTTACCAGTGTGCCTTTATCATCCTGGAATTATAACACCATGCCGCCAAACAATGTGCAACCAGCGACTAAAGATGATATTGGATTGGCTGGAGCTGGACAACCTGCCCCTATGACTTGTTGCTATAGCAGCAGTAATGAGAACACCCCTCCAACTTGGCCAAGTAACAACGGGTTTGAACAAAGAAACCAGGCCAAGCCAATTAAAGTTATGCCTGATTTTGCACAAGTCTACAGCTTCATTGGCAGTGTATTTGATCCAAATTCAACTAATCATCTCCAGAGGCTGAAACAGTTGGACCCAATAAATATGGAAACGGTACTGTTGTTGATGAGAAACCTCTCCATGAATCTAATGAGTCCTGAATTTGAGGATCATAAGAGGCTGCTTTCGTCATACGGAGCTAACTCCGAGGAGGCAAAGTTTGTGAATCCTTGCAGCAACTCCCTCAAATCTGAGAGTGCTGTTCTAACTGCTTAG 1026 0.463 MVSVNPNPAQGFYFFDPSSSNMGLPGVNPMPPPPTQHAPAAVPSAASSAVNVAEDPNKKIRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTSEHVPPPRPKRKAAHPYPQKAPKSAPTASHVTGPLQSSSAFIEPAYIYSQDSSSVLGTPVTSVPLSSWNYNTMPPNNVQPATKDDIGLAGAGQPAPMTCCYSSSNENTPPTWPSNNGFEQRNQAKPIKVMPDFAQVYSFIGSVFDPNSTNHLQRLKQLDPINMETVLLLMRNLSMNLMSPEFEDHKRLLSSYGANSEEAKFVNPCSNSLKSESAVLTA 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151408g00003 341 SUPERFAMILY Homeodomain-like 64 120 IPR009057 -
Stsc151408g00003 341 SMART sant 69 117 IPR001005 -
Stsc151408g00003 341 FunFam protein REVEILLE 6 isoform X1 72 120 - -
Stsc151408g00003 341 CDD SANT 72 115 IPR001005 -
Stsc151408g00003 341 ProSiteProfiles SANT domain profile. 68 121 IPR017884 -
Stsc151408g00003 341 PANTHER SWI/SNF COMPLEX-RELATED 46 301 - -
Stsc151408g00003 341 MobiDBLite consensus disorder prediction 24 56 - -
Stsc151408g00003 341 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Stsc151408g00003 341 MobiDBLite consensus disorder prediction 119 156 - -
Stsc151408g00003 341 Gene3D - 73 120 - -
Stsc151408g00003 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Stsc151408g00003 341 NCBIfam myb-like DNA-binding domain, SHAQKYF class 68 117 IPR006447 GO:0003677
Stsc151408g00003 341 Pfam Myb-like DNA-binding domain 70 115 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151408g00003 Stsc-Chr151408 35779 40246 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc151408g00003 Myb_DNA-binding 2.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151408g00003 - - aip:107622330 600.897