Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151405g00011 ATGGCTAAGTCATGTGGAGTCTGTCACAAAAGGCACGATGTATTCATTAGCTTCCGAGGTGGAGACACACGCACCGACTTCACTAGCCATCTTCACGCTGCTCTCACCAAAAGGGGAATTGAAACATACATCGACTACCGACTTCGAAGCGGAGATGATATCTGGGAATCGCTTTGTAAAGCAATCCAGGAATCACATATATCCATCGTCGTTTTCTCTAAAGACTACGCTTCTTCCAGATGGTGCTTGAAAGAACTGGTTCAAATAATGAAATGCAGAAGAGAACAGGGGCAGCTTGTTATTCCTGTGTTCTGCAAAACGGATCCTTCACAAATACGGGATCACAGCGAGAGTTGCGAGAATCTTATCAAGGAAAATGACGAATTGGAAGTACATCGATGGATGGATGCTCTCACCGAGGCCGCAGATCTATCTCCATCCTACTCACAAAGCTCTGCCAATAGGGACGAGTCTCTACTCATCAAGGATGTCGTCAAACATGTCATGCAAAAGCTGCTGAAACTTAGATATTCCAGTATCATAAAAGGGCTTGTTGCAATTGATGAAGCTCGTAAAGGCATTGAATTATTAATGAAAAATGCTCGAAGAATTGGAATTTGGGGTATGGGAGGAATAGGAAAAACTACCATTGCTAAAGTCATGTTTACCATCCTTTCTCCCCACTATGATAGTGTTTGCTTCTTGAAAAATATATCAGAGGAATCAAAACACAATGAATTGGCATATTTGCGTAACAAGCTCTCCGAGCTACTAAAGGAAATTAAACTTGTACATAAGGTTGTGGGAACTACCCACACAACAGGGAGGATGAACAGTAACAAAGTTCTCATTGTGCTTGATGATGTGGATACTCCTGAGCAATTAGACTACTTGTGTGGAGAGTCTGAAGTAATCAATAATCTACCAGAAGATAGCAGAGTCATTATTACAACAAGAAATAGGCGTTTGCTTATTAGCAAAGTTGATGAGATATACGAGGTCAGGACATTGGACCCCAAAGAATCACTAAAGCTTTTTAGCCTAAAAGCCTTCAGGGAAAGCCATCCCAAAGAGGGATATGAACAACTCTCAAGACAAGTGGTAGAATATGCAGGAGGCATTCCCTTCGCTCTAAATGTTTTGGGTTCATATCTCCACTCCAGGTCTATACAATTTTGGGAGAGTACTTTGAGGAAACTTAAAAAATCTCCTTATGTAGAAATTCAAGACATGTTAAGAGTGAGCTATGACGGATTAGAGCCTCTAGAGCAGAAGATATTTCTAGACATTGCATTCTTCTTCAAAGATGAAAAGAAAGACCTTGCGATAAGGATACTTGATGCTTGTGGTTTTGAAGCAAGTAGTGGAATAGGCGTACTTAAAGATAAAGCTTTGATAACCATTTCATCGTATGACGATAGAATTCAAATGCATGACTTGTTGCGAGAAATGGCTACGGAAATAGTGCGCCGAGAATCTGGATCGGAACCTGGAGGACGCAGCAGATTGATGGATGTTAAAGACATTCGTAAAGTACTTGAAAACAACACGGGAACAAATGCAGTTGAAGGCATAATTTTAGACTTGTCTCGGATAAAAGATTTACATTTGAGTTCAGACATATTCGGAAAGATGAATAACATAAGGTTTCTAAAGTTTTATATTCCAAAAGGTGAGAGTTCCAGTAGCAAATGCCTATCAAAAGGCCTTGAACAGTTCCCCAAAGAATTAAGGTACCTAGAGTGGGATAGATACCCATTGAAGTCATTTCCACCAACTTTTTGTTCAGAGTTGCTCGTTGAGATTCACATGCACCACAGCGATGTTGAAGAACTTTGGCAGGGTATGGATGCAAAGGACCTTAACAATTTAGAAGTAATTGACCTGAGTGAATGCAGAAAGTTGGCGAACATTCCAGATTTATCTAATGCATCAAGACTTAAATGGGTAAATCTCTCTGGTTGTGAGAAGTTGTGTTATCTTCACCCATCGGTTCTATCTTCTGGTATGCTAGTCACTTTGATACTGGACAGGTGCAAAAATCTCACTCAGGTTAAATGTGAGAAGCGCTTAGAATCTCTAAAGAAGATCAGTGTCAATGGCTGCTCAAGTCTCAAAGAATTTGAAGTGTGGTCAAATTCAATCAAAACATTAGATCTAAGCAAGACAGCAATTGAAACATTGCACACATCCATTGGGAATCTGAACAATCTTAGGTCACTCAATCTAAAAAGTTTAAGACTTGAGCATCTTCCAAATGACTTAGCTGGCTTGAAATTTCTTGAGTATCTTAATCTTTCTTGCAATGGACTAGAACTTCACAAAGACCAGCTACATGTCCTGTTTAATGGCTTACAATCACTTGAAATACTGCATTTGGAAGATTGTAGTAAGTTGCTTGAGCTCCCTGACAACATTAGCGCTTTATCAGAACTACATGAACTAAGGCTTGATGGGAGCAGTATAATCGCATTGCCAGCAAGCATCAAGAACCTTCAAAAGCTAGAAACTCTATCCTTGGAGAACTGCAATCAGCTTCGGAGTCTGCCAGAGCTTCCACCATCCATCAAAGAGCTTTATGCCGATAACTGCAGCTCATTGGTATCAGTGTCAAATCTAAAGAATTTGGCAACTAAGATGATAGGACAGGGGAAATACATTTCTTTCAAGGATAGCTTCAAACTAGGTAACTATTCACTCTATTCCATCATGGAAAGCCTCTGGTTGACAATGATGAGTGCTGCATTCCACAATGTGTTGGTAAAAGCGTTCGACATGAATGTCCACAGTTATAACTATAATAGCGTTTGGGCTTGTCTACCAGGCAGTAGTATCCCAAGGCACTTCACAAATCGAACGACGGGGTCATCCATTACTGTTAGATTTCCGAATCCTGCCTCCGGGCTGGGAGTCATTCTTTGTGTGGTTCTCTCTCCATCTTTTGGAGTGAAGAAATTTGATGCTAAAATCCAATGCCAGTGCTACAATGCAGATGGTACACATATAGGTAATGACTCTGGATGGTATTATTATGAAGACATTCCAAACTTGAATTCAGATACTGTATTTCTCTGGTACGATCCGTACTTCTCTTTCAGCATTCTCAGGACTCATGAACAGCAGGTTTCTTTCAACTTTATAACTTGTGCAACAGATGGAGATGGGATGGTTGTGACAAAAGGGTGTGGTGTCCGCCTAATATGTCACTCGGAATTGGACAGTGTTTTAGGGGAAATGGAGTTGGAATATGAGAAGAAGGTGGAGTTGGGAATGAAGTTAGGATTGGCTTTAGACATGAAGCTAATAGAGCCCAAGCCAGGTATTCATAACTTGTTTTTTGAGTTAGATTATGGATGTGTGTTAGAACCGTCAATGAAATTTGAACTTGATTTAAGGCGTAGAGCTGTGGCAGCAGTAATTGAGGAACAAAGGCAAAAATATAGTGAGTTCATTTTTCCACCTCGATTAACTAGAATGTGGAAAATTTGCAGTCCTGGCTTGCAAAATGCCTTGTTCCCATAG 3522 0.4035 MAKSCGVCHKRHDVFISFRGGDTRTDFTSHLHAALTKRGIETYIDYRLRSGDDIWESLCKAIQESHISIVVFSKDYASSRWCLKELVQIMKCRREQGQLVIPVFCKTDPSQIRDHSESCENLIKENDELEVHRWMDALTEAADLSPSYSQSSANRDESLLIKDVVKHVMQKLLKLRYSSIIKGLVAIDEARKGIELLMKNARRIGIWGMGGIGKTTIAKVMFTILSPHYDSVCFLKNISEESKHNELAYLRNKLSELLKEIKLVHKVVGTTHTTGRMNSNKVLIVLDDVDTPEQLDYLCGESEVINNLPEDSRVIITTRNRRLLISKVDEIYEVRTLDPKESLKLFSLKAFRESHPKEGYEQLSRQVVEYAGGIPFALNVLGSYLHSRSIQFWESTLRKLKKSPYVEIQDMLRVSYDGLEPLEQKIFLDIAFFFKDEKKDLAIRILDACGFEASSGIGVLKDKALITISSYDDRIQMHDLLREMATEIVRRESGSEPGGRSRLMDVKDIRKVLENNTGTNAVEGIILDLSRIKDLHLSSDIFGKMNNIRFLKFYIPKGESSSSKCLSKGLEQFPKELRYLEWDRYPLKSFPPTFCSELLVEIHMHHSDVEELWQGMDAKDLNNLEVIDLSECRKLANIPDLSNASRLKWVNLSGCEKLCYLHPSVLSSGMLVTLILDRCKNLTQVKCEKRLESLKKISVNGCSSLKEFEVWSNSIKTLDLSKTAIETLHTSIGNLNNLRSLNLKSLRLEHLPNDLAGLKFLEYLNLSCNGLELHKDQLHVLFNGLQSLEILHLEDCSKLLELPDNISALSELHELRLDGSSIIALPASIKNLQKLETLSLENCNQLRSLPELPPSIKELYADNCSSLVSVSNLKNLATKMIGQGKYISFKDSFKLGNYSLYSIMESLWLTMMSAAFHNVLVKAFDMNVHSYNYNSVWACLPGSSIPRHFTNRTTGSSITVRFPNPASGLGVILCVVLSPSFGVKKFDAKIQCQCYNADGTHIGNDSGWYYYEDIPNLNSDTVFLWYDPYFSFSILRTHEQQVSFNFITCATDGDGMVVTKGCGVRLICHSELDSVLGEMELEYEKKVELGMKLGLALDMKLIEPKPGIHNLFFELDYGCVLEPSMKFELDLRRRAVAAVIEEQRQKYSEFIFPPRLTRMWKICSPGLQNALFP 1173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151405g00011 1173 PRINTS Disease resistance protein signature 619 635 - -
Stsc151405g00011 1173 PRINTS Disease resistance protein signature 371 385 - -
Stsc151405g00011 1173 PRINTS Disease resistance protein signature 203 218 - -
Stsc151405g00011 1173 PRINTS Disease resistance protein signature 276 290 - -
Stsc151405g00011 1173 ProSiteProfiles Leucine-rich repeat profile. 834 856 IPR001611 GO:0005515
Stsc151405g00011 1173 SUPERFAMILY L domain-like 477 876 - -
Stsc151405g00011 1173 Gene3D - 9 169 IPR035897 -
Stsc151405g00011 1173 SMART till_3 11 144 IPR000157 GO:0007165
Stsc151405g00011 1173 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 145 IPR035897 -
Stsc151405g00011 1173 FunFam Disease resistance protein (TIR-NBS-LRR class) 8 174 - -
Stsc151405g00011 1173 Pfam TIR domain 12 177 IPR000157 GO:0007165
Stsc151405g00011 1173 Coils Coil 112 132 - -
Stsc151405g00011 1173 ProSiteProfiles TIR domain profile. 10 172 IPR000157 GO:0007165
Stsc151405g00011 1173 Gene3D - 170 331 IPR027417 -
Stsc151405g00011 1173 Gene3D Ribonuclease Inhibitor 714 884 IPR032675 -
Stsc151405g00011 1173 Gene3D Ribonuclease Inhibitor 502 713 IPR032675 -
Stsc151405g00011 1173 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 709 IPR044974 GO:0006952
Stsc151405g00011 1173 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 430 IPR027417 -
Stsc151405g00011 1173 Gene3D - 336 420 IPR042197 -
Stsc151405g00011 1173 Pfam NB-ARC domain 197 414 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151405g00011 Stsc-Chr151405 42393 46934 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151405g00011 785 880 WRKY Transcription Factor Family AT4G12020 39.583 1.94e-08 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151405g00011 - - aip:107614919 1286.17