Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151405g00005 ATGCTAGGTTTATGGTGCATCTTCATCGATTATGAGCTCCGCAAAGGATACGAGTTATCGCCTTCACTCTCCAAAGCCATCGAAAACTCCCTTGTATCAGTGGTGGTGTTCTCAGAGAACTATGCTTCCTCAAAGTGGTGCTTGGAAGAACTTGTCAAAATACTAGAGTGCAGAGCAAAACATGGACAGGTAGTTATACCTGTGTTCTATAACATAGATCCATCACACGTACGGAAACAAGAAGGAAGTTACAAAAGAGCATTTGAGAAGCATTTACAGAATTCCAAGCTTGACATGAACAAGGTTCAGAAGTGGAAGCATGCTCTAGATGAAGCAGCAAATTTATCTGGCTGGGACTCTCACTCCCGCTCCTATAGGGATGACTCTGAGCTAATAGAAAGGATTGCCAAAGATGTTTTGCAAAAGCTGAATTATCATTACCCATCCAATAGTTTTACAGGTCTTGTCAATATTGATAAAAAGGCTGCACCTATAGAATCATTGCTAAGTGAAGCCCTATCGGTTCCTGCTGCTTGGAAAACATACGGGAAAGATCTGTGCACTGAGTTGCAGAAGATTCCCCGTGAGGAAATTCTAAATGTGTTAAGATTGAGTTATGATGGATTAAATTATGAGGAGCAACAGATATTTCTAGACATTGCATGCTTTTTAAAGGGAATATCAAAAACAATTGTAGTTGATCTATTAGACTGTTGCGACTTCTACCCAGTCATTGGCATGAGATCCCTTCTTGATAAGGCTCTTATAACTATATCAAGTAATAATACTGTGGAGATGCATGACCTGGTACAACAAATGGGTTGGGAAATTGTTCGTCAAGAATCTATCAGAAATCCTGGAAAACGTAGCCGTCTATGGGATTCTGACGATGTTTGTGATGTTTTGAAGAACAATAAAGGAACTAAAGCAATTCATGGCATAATGTTAGATATGTCTCAATGTAGACAAAATCTATGCTTGAGTCCAGACACATTCAAAAAGATGCGTAATTTAAGATATCTCAGATTCTTTACCTCCTTAGGCATTGATGGAAGATCATGTGATCTATATCTTCCTACAGGGCTAGAGTCATTACCTGATAAATTAAGGTACCTTGAGTGGCATGCAGGCCCTTTGCAGTCCTTGCCATCAAATTTTTGTCCTGAAAATCTTGTTACTTTACGCATGCCACAAAGTCAATTTAAAAGACTTTGGAGTGGAGTGCAGAATCTTGTTAACTTGAAGGAAGTAGATCTAGCCGACTGCCGTGAATTGATTGAGCTCCCAGATTTCTCTAAGGCGAATAATCTTGAAAGTGCGCTTGAAAGTGAAGTTCATCTTGAATCTCTTAAGCAACTCCATATTGAGGGCTGTTCAAGTCTAAGGAAATTTTCTTTGTCTATAGAAGCAGAGTCATTGAATTTCACTTCTCCGGTCAAATTATCACACTTGACCTTTGGTTGTCTTAGCAAAGTAAAAGATATGTATGTCAATGGGAGTAGACTTGAGAACATTCCGGAGGAGTGGTCCTGCTTGAAATCTCTCAGAGCATTTTTGCTTCATAGCTACAGCAGAGTAATCTCCAAACAAACCCTCCAGGTCATATTTGATGGCTTGCAATATTTGCGACAATTGACTTTGCTCAACTGTCATGGCCTGTTTGAACTTCCCGACAACATCAACTGCTTATCATCGTTACAAATATTAGAGTTGGATGGAAGTGCTATTGAGAGGTTGCCTGAGAGCATCAAGCATCTCTCAAGGCTAGAAACACTGTCATTATGCAATTGCAAGAGGCTTCAATCTTTGCCGGAGCTTCCATTATCAATTATTAATTTGAAAGCATTTAACTGCCCATTGGTTCAGATGGAAGCATCCAGTTCAACCAATTCTAGGCCACAGGATCAAGAGTGCACCATTACTTCATTCCAAAATGTTGTAAGTTCCGATGAAGGGAAATGCATTCATTTATTCCGTCAAAGTATTAGGAAACTAGTGGATGCATATGAACTCAGACAAAGAGTAGGAGTAGGAGCAATTGGATGGCATAGATATCTTAAAATCTATTACCCAGACAACAGAATACCAAATTGGTTCACATGTCAGACAAAGGGATCTTCCATAAGCTTTGAACTTACTCAACCTTTGGATCACTATTTTAGTTTCCTTCTCTGTGTTGTTCTCCCTCCGATCACGACCTCTGATGCTAAGTTACTCCAAATCCGATACAATTGCCGGTTGGAAGATGGTAGATTTTCCAGGAGTGGCATTTTTCCAGATAGCTTTGCTATTATGGAGGATTGGGATTTCCCCCATGTTTTTATGTCATTCATTCAGGATGGCATCTTGGATCACATCAAGCAACAAAGAACGCTAACTCAAGCATGGGCTACAGCCAGAGATCACTTGACAAGAACCCTTTTAAAATGA 2430 0.3979 MLGLWCIFIDYELRKGYELSPSLSKAIENSLVSVVVFSENYASSKWCLEELVKILECRAKHGQVVIPVFYNIDPSHVRKQEGSYKRAFEKHLQNSKLDMNKVQKWKHALDEAANLSGWDSHSRSYRDDSELIERIAKDVLQKLNYHYPSNSFTGLVNIDKKAAPIESLLSEALSVPAAWKTYGKDLCTELQKIPREEILNVLRLSYDGLNYEEQQIFLDIACFLKGISKTIVVDLLDCCDFYPVIGMRSLLDKALITISSNNTVEMHDLVQQMGWEIVRQESIRNPGKRSRLWDSDDVCDVLKNNKGTKAIHGIMLDMSQCRQNLCLSPDTFKKMRNLRYLRFFTSLGIDGRSCDLYLPTGLESLPDKLRYLEWHAGPLQSLPSNFCPENLVTLRMPQSQFKRLWSGVQNLVNLKEVDLADCRELIELPDFSKANNLESALESEVHLESLKQLHIEGCSSLRKFSLSIEAESLNFTSPVKLSHLTFGCLSKVKDMYVNGSRLENIPEEWSCLKSLRAFLLHSYSRVISKQTLQVIFDGLQYLRQLTLLNCHGLFELPDNINCLSSLQILELDGSAIERLPESIKHLSRLETLSLCNCKRLQSLPELPLSIINLKAFNCPLVQMEASSSTNSRPQDQECTITSFQNVVSSDEGKCIHLFRQSIRKLVDAYELRQRVGVGAIGWHRYLKIYYPDNRIPNWFTCQTKGSSISFELTQPLDHYFSFLLCVVLPPITTSDAKLLQIRYNCRLEDGRFSRSGIFPDSFAIMEDWDFPHVFMSFIQDGILDHIKQQRTLTQAWATARDHLTRTLLK 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151405g00005 809 Gene3D Ribonuclease Inhibitor 309 468 IPR032675 -
Stsc151405g00005 809 Gene3D - 2 149 IPR035897 -
Stsc151405g00005 809 Gene3D Ribonuclease Inhibitor 469 636 IPR032675 -
Stsc151405g00005 809 Pfam TIR domain 7 158 IPR000157 GO:0007165
Stsc151405g00005 809 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 174 622 IPR044974 GO:0006952
Stsc151405g00005 809 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 118 IPR035897 -
Stsc151405g00005 809 SUPERFAMILY L domain-like 266 617 - -
Stsc151405g00005 809 Pfam Leucine Rich Repeat 390 409 IPR011713 -
Stsc151405g00005 809 SUPERFAMILY "Winged helix" DNA-binding domain 197 303 IPR036390 -
Stsc151405g00005 809 ProSiteProfiles TIR domain profile. 1 143 IPR000157 GO:0007165
Stsc151405g00005 809 SMART till_3 3 115 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151405g00005 Stsc-Chr151405 15460 19681 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151405g00005 198 599 WRKY Transcription Factor Family AT4G12020 36.941 3.24e-60 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151405g00005 - - ahf:112710162 629.787