Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151404g00007 ATGGATGAAGACGCGATGATAACCGTTAGATCTAGGTCATTGGCAATTTCAATTGATTCACTAAGTTACCCTTGTGTATATAATTCCTCTCTGCGGCGCCTTTTCTCTCCTCTTCTGAAAACCCTAACAAAGCAGAACGCGGAAGCAGAAGGAGCGAAGAAGAAGATGGTGCAGCGTCTTACCTACAGGAAGCGGCACAGCTATGCCACGAAATCAAATCAGCACAGAGTGGTGAAGACTCCTGGTGGCAAGCTCGTTTATCAGAGTACCAAGAAGAGAGCCAGTGGGCCTAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGTATTCCACACTTGAGGCCAGCCGAATACAAGAGGTCAAGGTTGCCTAGAAACCGCAGGACTGTTAACCGGGCATATGGAGGAGTTTTGTCTGGTAGCGCTGTCAGGGAAAGGATCATTCGAGCCTTCTTGGTTGAAGAACAAAAGATTGTGAAGAAGGTCTTGAAGATCCAGAAAGCTAAGGAAAAGCAATCCTTGAAGGGTTAA 528 0.4754 MDEDAMITVRSRSLAISIDSLSYPCVYNSSLRRLFSPLLKTLTKQNAEAEGAKKKMVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQSLKG 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151404g00007 175 PRINTS Ribosomal protein L34 signature 68 81 IPR008195 GO:0003735|GO:0005840|GO:0006412
Stsc151404g00007 175 PRINTS Ribosomal protein L34 signature 99 109 IPR008195 GO:0003735|GO:0005840|GO:0006412
Stsc151404g00007 175 PRINTS Ribosomal protein L34 signature 121 143 IPR008195 GO:0003735|GO:0005840|GO:0006412
Stsc151404g00007 175 PRINTS Ribosomal protein L34 signature 81 98 IPR008195 GO:0003735|GO:0005840|GO:0006412
Stsc151404g00007 175 Gene3D - 56 92 - -
Stsc151404g00007 175 Coils Coil 39 59 - -
Stsc151404g00007 175 Gene3D - 94 175 - -
Stsc151404g00007 175 ProSitePatterns Ribosomal protein L34e signature. 70 83 IPR018065 -
Stsc151404g00007 175 PANTHER 60S RIBOSOMAL PROTEIN L34 56 171 IPR008195 GO:0003735|GO:0005840|GO:0006412
Stsc151404g00007 175 Pfam Ribosomal protein L34e 56 151 IPR008195 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151404g00007 Stsc-Chr151404 18738 20946 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151404g00007 56 170 Cytoplasmic Ribosomal Protein Gene Family AT1G69620 93.043 3.82e-75 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151404g00007 K02915 - sind:105177244 213.386