Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151404g00003 ATGGAGGAGAGAAACAATAACAATAATAATGATGGTGAGAAAGTAGGAGATGAAGTAATGCTACCAGGTTTTAGGTTTCATCCAACTGATGAGGAGCTTGTTGGGTTTTACCTGAGGAGGAAGATTCAGCAAAGACCACTCTCCATTGAGCTCATCAAGCAACTTGATATCTATAAATACGATCCCTGGGATCTTCCAAAGTTAGCAAGCACAGGAGAGAAAGAGTGGTATTTCTACTGTCCAAGAGACAGAAAGTACAGGAACAGTGCAAGGCCAAATAGAGTAACTGGTGCTGGGTTCTGGAAAGCCACTGGGACTGATAGGCCTATATACTCATCTTCATCAGAAGGTTCTTCTTCTTCTTCAAAGTGTATTATTGGACTGAAGAAATCACTTGTGTTCTACAAAGGTAGAGCTGCCAAAGGGGTCAAGACTGATTGGATGATGCATGAGTTCAGGCTACCTTCTCATCACTCTTCTTCTTCATCATTGCTTTCACAAAACAACAAGTACTTGGACAACACCATTATTCCACCCAATGAATCATGGGCAATATGCAGGATCTTCAAGAAAACAAACTCAACATCAGCACAAAGAGCTCTCTCTCGATCTTGGGTTTCTTCTCTATTACCTACTGCTGAACCAACTACCCCTGATCATAATAATAATAATATTCAAACCAAAGATAACAATAATCCTCAAGAAATTATTAACACCCAGTTTTGCTCATCAACCACAACCAATATTATTCCACTAACAAAAAAACCTAATTGCTGCATAGATGTTATTAGTAATCATTTTTGTCCTTTATTAGATGTTACTTCTGCCTCATATAATTCCATTGTCAACCCTTTGATTTATTACAAAGCACTTGATCATTTTTACCTACCCTTTTCATCGTCATCAAATGGTAGAGACCATATTAGCAATAATAATAGCTTCATGTTCTCATCCTCTGATAATGGTTCATCAACAAGTAATACAAATTTTATTGGTGGGTTGCCACAAATAGGGATGCACCAATTTTATGATGATACTAATAATGATGCAATGGTGAAATTAAATAATAATAATAATAATGTGCATAGTGGTGTTGATGAGCAAGATTTGGAGACATTAAGATCCTTTGGTTTTCCATTCGGTGTGCCATTGAATATTGCTGGGGAAGCATGGAAGTCAAATTATAATAATGTGTATTGGGATGCTTCTTCTTGCCCTAGTTATTCCACAACCAAGTGCTACACCTAA 1248 0.3726 MEERNNNNNNDGEKVGDEVMLPGFRFHPTDEELVGFYLRRKIQQRPLSIELIKQLDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSSSEGSSSSSKCIIGLKKSLVFYKGRAAKGVKTDWMMHEFRLPSHHSSSSSLLSQNNKYLDNTIIPPNESWAICRIFKKTNSTSAQRALSRSWVSSLLPTAEPTTPDHNNNNIQTKDNNNPQEIINTQFCSSTTTNIIPLTKKPNCCIDVISNHFCPLLDVTSASYNSIVNPLIYYKALDHFYLPFSSSSNGRDHISNNNSFMFSSSDNGSSTSNTNFIGGLPQIGMHQFYDDTNNDAMVKLNNNNNNVHSGVDEQDLETLRSFGFPFGVPLNIAGEAWKSNYNNVYWDASSCPSYSTTKCYT 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151404g00003 415 ProSiteProfiles NAC domain profile. 20 191 IPR003441 GO:0003677|GO:0006355
Stsc151404g00003 415 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 19 299 - -
Stsc151404g00003 415 Pfam No apical meristem (NAM) protein 22 154 IPR003441 GO:0003677|GO:0006355
Stsc151404g00003 415 FunFam NAC domain-containing protein 35 29 194 - -
Stsc151404g00003 415 Gene3D NAC domain 29 196 IPR036093 GO:0003677|GO:0006355
Stsc151404g00003 415 SUPERFAMILY NAC domain 17 191 IPR036093 GO:0003677|GO:0006355
Stsc151404g00003 415 MobiDBLite consensus disorder prediction 213 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151404g00003 Stsc-Chr151404 9569 12270 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151404g00003 7 211 NAC Transcription Factor Family AT1G26870 73.171 1.47e-98 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc151404g00003 NAM 5.6e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151404g00003 - - gmx:100783995 380.178