Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151403g00005 ATGTGTAGAAGTGGGTGTTGGTTAGTTGGGATCTTGATTTTGGTAGTGAGGGCGTTGGGAGGAGATGGGTACCCAGTTGAGGATCTGGTGGTCAACCTTCCTGGACAGCCCAAAGTTGACTTCAGCCAATATGCTGGCTATGTTGATGTTGATTCCAACCATGGAAGAAGCCTCTTCTACTATTTTGTTGAGGCTGCTCTTGATTCTCACAATAAGCCCCTCACTCTTTGGCTCAATGGAGGTCCGGGGTGTTCCTCAGTTGGAGGAGGTGCATTTACTGAACTAGGACCTTTTTTTCCTAAAGGAGATGGACGTGGTCTAAGAAGAAATTCTAATTCATGGAACAAAGCATCCAACCTTCTGTTTGTTGAGTCTCCTGCCGGAGTTGGTTGGTCATACTCAAATACAAGCTCAGATTATAATGCCGGAGATGCATCCACCGCCAATGATATGTATTTGTTCATGCTGAAATGGTATGAGAAGTTCCCATCATTCAGATCAAGAGAGCTGTTCCTCACAGGAGAAAGCTATGCAGGACATTACATACCACAGTTAACTAATGCTCTACTTGATCATAATGCTCGTTCAACTGGTTTCAAATTCAACATTAAAGGGGTTGCTATTGGAAACCCACTTTTGAGACTTGATCGGGATATACCATCCACATATGAATACTTTTGGTCCCATGGAATGATTTCTGATGAAGTTGGACTTGCTATTATGAATGATTGTGACTTTGATGATTATGTTTACGAAGATCCTCACAATGTTTCTCGTTCATGCGCCAACGCCATAAAGGAAGCGAATACTATAGTGGGCGATTATGTAAATAACTATGATGTGATTCTTGATGTTTGCTACCCCTCCATTGTAGAACAAGAGTTGAGATTGAAAAAAGTGGCTACTAAAATAAGTGTAGGTGTTGATGTCTGCATGAGTTATGAAAGGCGTTTCTACTTCAACCTTCCTGAGGTTCAGAAGGCCCTCCATGCAAATCGTACCAAACTTCCTCATAGCTGGTCCATGTGTAGTCAAGTTCTAAACTATAACGAAACTGATGGTAACATCAACATCCTTCCAATTCTCAAAAGGATAGTCCAAAACCATATCCCAGTATGGATTTTCAGTGGCGACCAAGATTCTGTTGTGGCGTTATTGGGATCTCGAACTTTAATTCGTGAACTAGCTCATGAATTGCATTTCAAAGTTACAGTCCCTTATGGAACTTGGTTCCACAAAGGCCAGGTTGGAGGTTGGGTAACAGAATATGGGAAATTGTTGACTTTTGCAACTGTAAGAGGAGCTGCTCACATGGTTCCATACTCACAACCTTCAAGAGCATTGCGTTTATTCACTTCATTTGTGAGAGGAAGGAGGTTGCCAAATACAACACGTCCTTCCATTGATGATTGA 1413 0.4197 MCRSGCWLVGILILVVRALGGDGYPVEDLVVNLPGQPKVDFSQYAGYVDVDSNHGRSLFYYFVEAALDSHNKPLTLWLNGGPGCSSVGGGAFTELGPFFPKGDGRGLRRNSNSWNKASNLLFVESPAGVGWSYSNTSSDYNAGDASTANDMYLFMLKWYEKFPSFRSRELFLTGESYAGHYIPQLTNALLDHNARSTGFKFNIKGVAIGNPLLRLDRDIPSTYEYFWSHGMISDEVGLAIMNDCDFDDYVYEDPHNVSRSCANAIKEANTIVGDYVNNYDVILDVCYPSIVEQELRLKKVATKISVGVDVCMSYERRFYFNLPEVQKALHANRTKLPHSWSMCSQVLNYNETDGNINILPILKRIVQNHIPVWIFSGDQDSVVALLGSRTLIRELAHELHFKVTVPYGTWFHKGQVGGWVTEYGKLLTFATVRGAAHMVPYSQPSRALRLFTSFVRGRRLPNTTRPSIDD 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151403g00005 470 Pfam Serine carboxypeptidase 35 457 IPR001563 GO:0004185|GO:0006508
Stsc151403g00005 470 ProSitePatterns Serine carboxypeptidases, serine active site. 172 179 IPR018202 GO:0004185
Stsc151403g00005 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 110 122 IPR001563 GO:0004185|GO:0006508
Stsc151403g00005 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 158 183 IPR001563 GO:0004185|GO:0006508
Stsc151403g00005 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 123 133 IPR001563 GO:0004185|GO:0006508
Stsc151403g00005 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 427 440 IPR001563 GO:0004185|GO:0006508
Stsc151403g00005 470 SUPERFAMILY alpha/beta-Hydrolases 23 464 IPR029058 -
Stsc151403g00005 470 Gene3D - 358 457 - -
Stsc151403g00005 470 Gene3D - 311 347 - -
Stsc151403g00005 470 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 31 444 IPR001563 GO:0004185|GO:0006508
Stsc151403g00005 470 FunFam Carboxypeptidase 358 457 - -
Stsc151403g00005 470 FunFam Carboxypeptidase 24 288 - -
Stsc151403g00005 470 Gene3D alpha/beta hydrolase 26 287 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151403g00005 Stsc-Chr151403 30245 38276 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151403g00005 317 460 Calmodulin-binding Proteins AT2G22960 24.306 3.55e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151403g00005 K16297 - gmx:100801752 838.18