Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151397g00006 ATGGTGTCCAACACTGCTGGAAAGGTCATATGCTGCAAAGCTGCTGTGGCTTGGGAAGCTGGAAAGCCACTGGTGATGGAGGAAGTGGAGGTAGCTCCGCCGCAGGAAAATGAGGTCCGTATCAAGATATTGTTCACCTCACTCTGCCACACTGATGTCTACTTCTGGGAAGCTAAGGGACAGACACCAGTGTTTCCTCGTATTCTTGGTCATGAAGCCGGCGGCATTGTTGAGAGTGTTGGAGAGGGCGTGACGGATCTCAAGCCCGGCGATCATGTTCTTCCGGTGTTCACAGGGGAGTGCAAGGAGTGTCAGCATTGCAAATCAGAGGAAAGTAACATGTGTGATCTCTTAAGGATCAACACTGACCGTGGAGTGATGATTGGCGATGGCAAGTCAAGATTCTCAATCAAGGGAAAACCAATTTACCATTTTGTTGGAACCTCCACATTCAGTGAATACACTGTTGTTCATGTTGGCCAGGTTGCCAAGATTAACCCTGCTGCACCACTTGACAAAGTTTGTGTCCTCAGTTGTGGAATCTCAACAGGTCTTGGTGCTACATTGAATGTTGCAAAACCAACCAAAGGTTCATCAGTGGCTATATTTGGATTGGGAGCTGTGGGGCTAGCTGCGGCCGAGGGTGCAAGACTAGCTGGTGCATCGAGGATCATTGGGGTTGACTTGAATGCCAAGAGATTTACCGAAGCTAAGAAGTTCGGAGTTACTGAGTTTGTGAATCCAAAAGATTATAACAAGCCTGTTCAAGAGGTGATCGCTGAATTGACTAACGGCGGTGTGGACCGGAGTGTTGAGTGTACTGGAAGTCTCAATGCTATGATCTCCGCATTCGAATGTGTCCATGATGGATGGGGTGTTGCTGTGCTTGTTGGTGTGCCAAACAAAGATGATGCGTTCAAAACACATCCAATCAATCTCTTGAACGAGAAGACTCTAAAGGGTACTTTCTTTGGTAACTATAAGCCGCGTTCTGATCTCCCATCAGTGGTGGAAATGTACATGAACAAGGAACTTGAACTGGAGAAGTTTATCACACATGAAGTGCCATTCTCAGAAATCAACAAGGCCTTTGAATACATGCTTAAGGGAGAGAGCCTCCGTTGTATAATCCGCATGCCTGCATAA 1146 0.4703 MVSNTAGKVICCKAAVAWEAGKPLVMEEVEVAPPQENEVRIKILFTSLCHTDVYFWEAKGQTPVFPRILGHEAGGIVESVGEGVTDLKPGDHVLPVFTGECKECQHCKSEESNMCDLLRINTDRGVMIGDGKSRFSIKGKPIYHFVGTSTFSEYTVVHVGQVAKINPAAPLDKVCVLSCGISTGLGATLNVAKPTKGSSVAIFGLGAVGLAAAEGARLAGASRIIGVDLNAKRFTEAKKFGVTEFVNPKDYNKPVQEVIAELTNGGVDRSVECTGSLNAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPINLLNEKTLKGTFFGNYKPRSDLPSVVEMYMNKELELEKFITHEVPFSEINKAFEYMLKGESLRCIIRMPA 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151397g00006 381 Pfam Zinc-binding dehydrogenase 207 337 IPR013149 -
Stsc151397g00006 381 PANTHER ALCOHOL DEHYDROGENASE 7 377 - -
Stsc151397g00006 381 SUPERFAMILY GroES-like 5 187 IPR011032 -
Stsc151397g00006 381 CDD alcohol_DH_plants 10 378 - -
Stsc151397g00006 381 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 70 84 IPR002328 GO:0008270|GO:0016491
Stsc151397g00006 381 Gene3D - 20 371 - -
Stsc151397g00006 381 FunFam alcohol dehydrogenase 1-like isoform X1 20 183 - -
Stsc151397g00006 381 Gene3D - 184 322 - -
Stsc151397g00006 381 FunFam Alcohol dehydrogenase class-P 184 322 - -
Stsc151397g00006 381 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 170 343 IPR036291 -
Stsc151397g00006 381 SUPERFAMILY GroES-like 329 378 IPR011032 -
Stsc151397g00006 381 Pfam Alcohol dehydrogenase GroES-like domain 37 164 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151397g00006 Stsc-Chr151397 38302 40823 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151397g00006 36 115 Monolignol Biosynthesis Gene Families AT4G39330 39.506 8.52e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151397g00006 K18857 - gmx:100783318 711.064