Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151395g00003 ATGAAGTCAACTCAAATGTTTGCTATTGATTGTGAAATGGTTCTCTGTGAAGATGGGACTGAAGCAGTAGTAAAAGTATGCGTGGTAGACCATAATTTAGAGGTCAAGCTAAATGAACTTGTAAAACCTGGGAAAGCAATTGCAGACTATAGAACAGAGATTACTGGTATTTCTTCTCAAGATCTTGAGGCAGTTACGTGCTCCTTACCTGATGTACAGAAATCCATGAAGAAGTTGTTAGAAAATGGAGCCATATTAGTGGGACACAGTTTGCATAATGATCTCCGTGTGCTGAAGATAGATCATGTTAGAGTGGTTGACACTGCATATATCTTCCAATCTTCAGATGGATCAATTCACAAGAGACCTTCTTTAAATAATTTGTGCAAGACTGTGTTAGGTTATGAAGTTCGGAAAGATGGAGCTCCGCATAATTGTCTCGACGATGCACGTGCAGCAATGGAACTTTTACTTGCAAGGGTTAAGAATGGCGTTGATAAAGATTTTCCCGTTCAACTTCAAGAGCCAGTTTCTGAAAGTGACATGGCAAGGCTGTTTCTTCATAATATATCAACCACTGTGAACAGTGAAACACTGGATAAAGTTCTTCCTGGAGAGTACACAATAGAAGTGAAGCCTTCCAGGAAAGCAGGGCAAGGAAATAATAAATATTGCGCATTTGCTATATTTAAGAATCCACTGGAAGCACACAATGCCTATGAAAATATCCAAGGCACTGAATTGAAGGATTCGAATGGGAGACCGCAGAAGCTTGTCAAATTTCGGCTAGATGCAGGTAATACTGCAAGTATTTTTGTTAGGAAGACGGCCCTGCATGAGCCTCGTGACTCTATTTCACTAAAGAGAGGTTTACAAACGGACGATGAAGATCATATTTCCAAGAAATCAAAGCGTGAAGATGATGCCCAGTTGAACGAGATTGAATCACTGAATGAACGATTGAAGGAAAGTGAGTCGGAGACTGCATCTTTGAGGGAACAGCTGAAACAAAAGGATCTTGACATTGAAGCTTTGATGTTACAATTGAGTAAGAAGGATTTTGAAATCAACCTGCTCAATAAAATGGTAGCCTCTTTAAAAAAGAGAAGATAA 1113 0.3944 MKSTQMFAIDCEMVLCEDGTEAVVKVCVVDHNLEVKLNELVKPGKAIADYRTEITGISSQDLEAVTCSLPDVQKSMKKLLENGAILVGHSLHNDLRVLKIDHVRVVDTAYIFQSSDGSIHKRPSLNNLCKTVLGYEVRKDGAPHNCLDDARAAMELLLARVKNGVDKDFPVQLQEPVSESDMARLFLHNISTTVNSETLDKVLPGEYTIEVKPSRKAGQGNNKYCAFAIFKNPLEAHNAYENIQGTELKDSNGRPQKLVKFRLDAGNTASIFVRKTALHEPRDSISLKRGLQTDDEDHISKKSKREDDAQLNEIESLNERLKESESETASLREQLKQKDLDIEALMLQLSKKDFEINLLNKMVASLKKRR 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151395g00003 370 CDD REX1_like 7 158 IPR034922 -
Stsc151395g00003 370 Coils Coil 304 341 - -
Stsc151395g00003 370 Gene3D - 297 369 - -
Stsc151395g00003 370 SUPERFAMILY RNA-binding domain, RBD 176 251 IPR035979 GO:0003676
Stsc151395g00003 370 FunFam Small RNA degrading nuclease 3 1 175 - -
Stsc151395g00003 370 SUPERFAMILY Ribonuclease H-like 7 161 IPR012337 -
Stsc151395g00003 370 CDD RRM_SF 185 250 - -
Stsc151395g00003 370 Gene3D - 174 264 IPR012677 -
Stsc151395g00003 370 SMART exoiiiendus 5 166 IPR013520 -
Stsc151395g00003 370 Pfam Exonuclease 8 157 IPR013520 -
Stsc151395g00003 370 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 3 174 IPR047021 GO:0004527
Stsc151395g00003 370 Gene3D - 2 173 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151395g00003 Stsc-Chr151395 19361 22797 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151395g00003 7 156 C2H2 Transcription Factor Family AT2G48100 32.716 3.15e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151395g00003 K14570 - gmx:100785565 462.611